Variant report

Variant	rs10882442
Chromosome Location	chr10:96128581-96128582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10786161	0.84[AMR][1000 genomes]
rs10882416	0.90[CEU][hapmap]
rs10882424	0.95[CEU][hapmap];0.81[AMR][1000 genomes]
rs10882430	0.81[AMR][1000 genomes]
rs10882437	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10882443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187876	0.81[AMR][1000 genomes]
rs11187881	0.95[CEU][hapmap];0.81[AMR][1000 genomes]
rs11187901	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12220125	0.95[CEU][hapmap]
rs12263737	0.90[CEU][hapmap]
rs12773229	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3765524	0.95[CEU][hapmap]
rs3818432	0.95[CEU][hapmap]
rs6583937	0.95[CEU][hapmap];0.81[AMR][1000 genomes]
rs6583940	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7081265	0.81[CEU][hapmap]
rs7084988	0.95[CEU][hapmap];0.84[AMR][1000 genomes]
rs7085378	0.95[CEU][hapmap];0.84[AMR][1000 genomes]
rs7092226	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs7096037	0.81[AMR][1000 genomes]
rs7100430	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96127200-96129800	Enhancers	Brain Cingulate Gyrus	brain
2	chr10:96128000-96129800	Enhancers	Brain Hippocampus Middle	brain
3	chr10:96128000-96130000	Enhancers	Brain Angular Gyrus	brain
4	chr10:96128000-96130200	Enhancers	Brain Substantia Nigra	brain
5	chr10:96128000-96132200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr10:96128200-96128800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:96128200-96129800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:96128400-96131400	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links