Variant report

Variant	rs12773229
Chromosome Location	chr10:96119882-96119883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96118330..96120262-chr10:96120953..96122758,2	K562	blood:
2	chr10:96116941..96119884-chr10:96161764..96163918,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108239	Chromatin interaction
ENSG00000173145	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10786161	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10882416	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882422	0.86[AMR][1000 genomes]
rs10882424	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882430	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882435	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882436	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882437	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882443	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11187853	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187869	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11187876	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11187881	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187893	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187894	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187899	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187900	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187901	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11558740	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12217597	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12219063	0.84[EUR][1000 genomes]
rs12220125	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12263737	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12780491	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12781451	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2274223	0.81[AMR][1000 genomes]
rs34689035	0.80[AMR][1000 genomes]
rs3765524	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3781265	0.82[AMR][1000 genomes]
rs3818432	0.91[EUR][1000 genomes]
rs6583934	0.83[AMR][1000 genomes]
rs6583935	0.87[AMR][1000 genomes]
rs6583937	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6583940	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7074125	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7077192	0.83[EUR][1000 genomes]
rs7081265	0.84[EUR][1000 genomes]
rs7084339	0.86[AMR][1000 genomes]
rs7084988	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7085378	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7092226	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7094783	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7096037	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7099485	0.86[AMR][1000 genomes]
rs7100430	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7100870	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7897678	0.81[AMR][1000 genomes]
rs7897963	0.83[AMR][1000 genomes]
rs7903902	0.87[AMR][1000 genomes]
rs7908638	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
2	chr10:96043600-96121000	Weak transcription	Psoas Muscle	Psoas
3	chr10:96078200-96121600	Weak transcription	Fetal Brain Male	brain
4	chr10:96080400-96121000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:96081600-96121000	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:96081600-96121000	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:96081800-96121000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:96081800-96121000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:96082400-96121000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:96085000-96121000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:96085000-96122200	Weak transcription	Gastric	stomach
12	chr10:96086200-96121200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:96087600-96121200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:96088200-96121800	Weak transcription	Aorta	Aorta
15	chr10:96089000-96120600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:96089600-96121000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:96090400-96121000	Weak transcription	Fetal Heart	heart
18	chr10:96096200-96121000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:96100000-96121800	Weak transcription	Colonic Mucosa	Colon
20	chr10:96102800-96121000	Weak transcription	Brain Angular Gyrus	brain
21	chr10:96104200-96121000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:96104600-96120600	Weak transcription	Small Intestine	intestine
23	chr10:96104600-96121000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:96105800-96121000	Strong transcription	Primary B cells from cord blood	blood
25	chr10:96108400-96120400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr10:96108400-96120600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:96108400-96121800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:96110400-96121800	Weak transcription	Spleen	Spleen
29	chr10:96110400-96122000	Weak transcription	Pancreas	Pancrea
30	chr10:96111600-96121200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:96111600-96121800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:96111600-96121800	Weak transcription	Lung	lung
33	chr10:96112600-96121000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:96112800-96121400	Weak transcription	Right Ventricle	heart
35	chr10:96113400-96121000	Weak transcription	Thymus	Thymus
36	chr10:96113400-96122000	Weak transcription	Esophagus	oesophagus
37	chr10:96114600-96121600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr10:96114800-96120200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:96116200-96120400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:96116200-96121000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:96116400-96120000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:96116400-96120400	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr10:96116400-96120600	Strong transcription	Fetal Muscle Leg	muscle
44	chr10:96117200-96121000	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:96117400-96121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:96117600-96120800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:96117600-96121000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:96117600-96121000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:96117600-96121000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:96117600-96121000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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