Variant report

Variant	rs6583940
Chromosome Location	chr10:96127629-96127630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96125181..96128659-chr10:96161307..96164992,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108239	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10786161	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882424	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882430	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882437	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882443	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187853	0.81[EUR][1000 genomes]
rs11187876	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187881	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187901	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12219063	0.85[EUR][1000 genomes]
rs12220125	0.82[EUR][1000 genomes]
rs12773229	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3765524	0.80[EUR][1000 genomes]
rs3818432	0.81[EUR][1000 genomes]
rs6583937	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7074125	0.84[EUR][1000 genomes]
rs7077192	0.83[EUR][1000 genomes]
rs7081265	0.85[EUR][1000 genomes]
rs7084988	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7085378	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7092226	0.92[ASN][1000 genomes]
rs7094783	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7096037	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7100430	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7100870	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7908638	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96123200-96128000	Weak transcription	Brain Angular Gyrus	brain
2	chr10:96123400-96128200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:96123400-96128400	Weak transcription	Brain Anterior Caudate	brain
4	chr10:96126600-96128000	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:96126600-96128000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:96126600-96128000	Weak transcription	Brain Substantia Nigra	brain
7	chr10:96127200-96129800	Enhancers	Brain Cingulate Gyrus	brain

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