Variant report

Variant	rs7101725
Chromosome Location	chr11:108819679-108819680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10502105	0.81[ASN][1000 genomes]
rs10890907	0.81[ASN][1000 genomes]
rs11212810	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11212815	0.82[ASN][1000 genomes]
rs11212820	0.81[ASN][1000 genomes]
rs11212821	0.81[ASN][1000 genomes]
rs11212822	0.81[ASN][1000 genomes]
rs4754362	0.81[ASN][1000 genomes]
rs4754364	0.81[ASN][1000 genomes]
rs7112835	0.81[ASN][1000 genomes]
rs7113892	0.81[ASN][1000 genomes]
rs7130411	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108805200-108829600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108810200-108829000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:108812000-108822200	Weak transcription	Pancreas	Pancrea
4	chr11:108812000-108823400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:108812200-108828800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:108819400-108820200	Weak transcription	Primary T cells from cord blood	blood
7	chr11:108819400-108828400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:108819400-108828400	Weak transcription	A549	lung
9	chr11:108819400-108828400	Weak transcription	NHEK	skin
10	chr11:108819600-108820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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