Variant report

Variant	rs7101995
Chromosome Location	chr11:45704991-45704992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10734537	0.92[AFR][1000 genomes]
rs10742764	0.91[AFR][1000 genomes]
rs10769163	0.93[AFR][1000 genomes]
rs10769164	0.96[AFR][1000 genomes]
rs10838504	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038614	0.90[AFR][1000 genomes]
rs1466068	0.88[AFR][1000 genomes]
rs4755336	0.96[AFR][1000 genomes]
rs4756016	0.88[AFR][1000 genomes]
rs7114779	0.93[AFR][1000 genomes]
rs7115047	0.85[AFR][1000 genomes]
rs7115106	0.91[AFR][1000 genomes]
rs7115214	0.93[AFR][1000 genomes]
rs7115241	0.93[AFR][1000 genomes]
rs7929114	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7101995	OR4C45	cis	cerebellum	SCAN
rs7101995	EXT2	cis	cerebellum	SCAN
rs7101995	CHST1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45700600-45706000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:45700800-45717800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45703800-45707400	Enhancers	Dnd41	blood
4	chr11:45704400-45705600	Weak transcription	Thymus	Thymus
5	chr11:45704400-45706600	Enhancers	Fetal Thymus	thymus
6	chr11:45704800-45705400	Enhancers	Spleen	Spleen
7	chr11:45704800-45705800	Enhancers	Fetal Heart	heart
8	chr11:45704800-45705800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:45704800-45706000	Enhancers	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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