Variant report

Variant	rs7929114
Chromosome Location	chr11:45706162-45706163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1026078	0.80[GIH][hapmap]
rs10838504	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12420703	0.82[GIH][hapmap]
rs7101995	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7929114	CHST1	cis	parietal	SCAN
rs7929114	OR4C45	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45700800-45717800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45703800-45707400	Enhancers	Dnd41	blood
3	chr11:45704400-45706600	Enhancers	Fetal Thymus	thymus
4	chr11:45705600-45706800	Enhancers	Thymus	Thymus
5	chr11:45705800-45706200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:45705800-45706200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:45705800-45706600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:45705800-45706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:45705800-45707400	Weak transcription	Fetal Heart	heart
10	chr11:45706000-45706200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:45706000-45706400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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