Variant report

Variant	rs7102048
Chromosome Location	chr11:120505190-120505191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120505005..120507153-chr11:120507628..120509568,2	K562	blood:
2	chr11:120501095..120503196-chr11:120504558..120506204,2	K562	blood:
3	chr11:120504875..120507218-chr11:120535749..120537975,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12292341	0.85[CEU][hapmap]
rs12295761	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317912	0.84[AMR][1000 genomes]
rs7101843	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119262	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120484800-120507400	Weak transcription	Right Atrium	heart
2	chr11:120503200-120506400	Enhancers	Fetal Brain Male	brain
3	chr11:120503400-120506800	Enhancers	GM12878-XiMat	blood
4	chr11:120503800-120505400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:120504200-120505400	Enhancers	Brain Germinal Matrix	brain
6	chr11:120504200-120505800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:120504200-120506800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:120504400-120505200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:120504400-120505400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr11:120504400-120505400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr11:120504400-120506000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr11:120504400-120506200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:120504400-120506200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:120504600-120505200	Enhancers	Fetal Lung	lung
15	chr11:120504600-120505200	Enhancers	Spleen	Spleen
16	chr11:120504600-120505400	Enhancers	Primary hematopoietic stem cells	blood
17	chr11:120504600-120506200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:120504600-120506200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:120504600-120506400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:120504600-120506400	Enhancers	Fetal Brain Female	brain
21	chr11:120504800-120505400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:120504800-120505600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
23	chr11:120505000-120505200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr11:120505000-120505200	Enhancers	Fetal Intestine Large	intestine
25	chr11:120505000-120505600	Enhancers	Fetal Heart	heart
26	chr11:120505000-120506800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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