Variant report
| Variant | rs7102420 |
|---|---|
| Chromosome Location | chr11:4943491-4943492 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000225003 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs57544489 | 1.00[AMR][1000 genomes] |
| rs57901308 | 1.00[AMR][1000 genomes] |
| rs57920748 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59534473 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59975458 | 1.00[AMR][1000 genomes] |
| rs7108641 | 0.93[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs7112804 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73401046 | 1.00[AMR][1000 genomes] |
| rs73405089 | 1.00[AMR][1000 genomes] |
| rs7932429 | 0.83[MKK][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
