Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:4940074-4947279..11:4988858-5002113	Hela-S3	cervix:
2	chr11:4941970..4943945-chr11:4950687..4952588,2	K562	blood:

Variant related genes	Relation type
ENSG00000225003	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10219407	1.00[CHB][hapmap]
rs10500632	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11033729	1.00[CHB][hapmap]
rs11033730	1.00[CHB][hapmap]
rs11034704	1.00[CHB][hapmap]
rs12273089	1.00[CHB][hapmap]
rs12288920	1.00[CHB][hapmap]
rs12290571	1.00[ASN][1000 genomes]
rs12417099	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419598	1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421276	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12421906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807423	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16907494	1.00[CHB][hapmap]
rs16907537	1.00[CHB][hapmap]
rs16907539	1.00[CHB][hapmap]
rs16907541	1.00[CHB][hapmap]
rs16907558	1.00[CHB][hapmap]
rs17252092	1.00[CHB][hapmap]
rs17252916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1946637	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35808145	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57920748	0.87[AFR][1000 genomes]
rs7102420	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs7108225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112804	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs71480739	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651650	1.00[CHB][hapmap]
rs993754	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: