Variant report
| Variant | rs12417099 |
|---|---|
| Chromosome Location | chr11:4940737-4940738 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 11:4940074-4947279..11:4988858-5002113 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000225003 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10500632 | 1.00[CEU][hapmap] |
| rs12290571 | 1.00[ASN][1000 genomes] |
| rs12419598 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12421276 | 1.00[ASN][1000 genomes] |
| rs12421906 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12807423 | 1.00[CEU][hapmap] |
| rs17252916 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1946637 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35808145 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7108225 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7108641 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71480739 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs993754 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
