Variant report

Variant	rs7102519
Chromosome Location	chr11:19153805-19153806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19137847..19140480-chr11:19152747..19156100,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs924750	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19139400-19156200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:19139400-19156200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:19139600-19175000	Weak transcription	Pancreas	Pancrea
4	chr11:19139800-19154200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:19139800-19155000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:19139800-19172000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:19140000-19164800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:19140000-19167600	Weak transcription	HMEC	breast
9	chr11:19140000-19169600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:19140000-19186400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:19140200-19175000	Weak transcription	Thymus	Thymus
12	chr11:19140800-19186800	Weak transcription	Colonic Mucosa	Colon
13	chr11:19141200-19154000	Weak transcription	Esophagus	oesophagus
14	chr11:19141200-19155800	Weak transcription	Fetal Stomach	stomach
15	chr11:19141600-19156200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:19142000-19168400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr11:19142800-19173200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:19143200-19167800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:19143400-19185800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:19143400-19186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:19143400-19201600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:19143600-19154000	Weak transcription	A549	lung
23	chr11:19143600-19157400	Weak transcription	Hela-S3	cervix
24	chr11:19143600-19167600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:19143600-19170400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:19143600-19197400	Weak transcription	Small Intestine	intestine
27	chr11:19143800-19168600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:19145400-19159400	Weak transcription	Stomach Mucosa	stomach
29	chr11:19147400-19170600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:19147600-19174200	Weak transcription	Osteobl	bone
31	chr11:19148400-19167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:19148800-19156200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:19149400-19154000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:19152200-19155200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr11:19152200-19156800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr11:19152600-19155800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:19152800-19154400	Strong transcription	HUVEC	blood vessel
38	chr11:19152800-19175000	Weak transcription	Psoas Muscle	Psoas
39	chr11:19153000-19156800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:19153200-19186600	Weak transcription	Aorta	Aorta
41	chr11:19153400-19154400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
42	chr11:19153400-19154600	Strong transcription	Dnd41	blood
43	chr11:19153400-19154800	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr11:19153400-19156800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
45	chr11:19153600-19154200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
46	chr11:19153600-19154400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:19153600-19154800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:19153600-19154800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:19153600-19155200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:19153600-19155400	ZNF genes & repeats	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links