Variant report

Variant	rs924750
Chromosome Location	chr11:19130817-19130818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1503503	0.83[ASN][1000 genomes]
rs16936075	0.91[ASN][1000 genomes]
rs16936115	0.95[ASN][1000 genomes]
rs3934970	0.93[ASN][1000 genomes]
rs56946079	0.85[ASN][1000 genomes]
rs57666278	0.95[ASN][1000 genomes]
rs58208423	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59246389	0.96[ASN][1000 genomes]
rs59630455	0.85[ASN][1000 genomes]
rs60304302	0.95[ASN][1000 genomes]
rs60767473	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6483578	0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7102519	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19125000-19138600	Weak transcription	Gastric	stomach
2	chr11:19129400-19133400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:19130200-19131000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:19130400-19131000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:19130400-19131400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:19130600-19131200	Enhancers	Esophagus	oesophagus
7	chr11:19130600-19131400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:19130800-19131200	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:19130800-19131600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:19130800-19131600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:19130800-19132800	Enhancers	Fetal Muscle Leg	muscle
12	chr11:19130800-19133400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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