Variant report

Variant	rs16936075
Chromosome Location	chr11:19093140-19093141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:19091906..19093550-chr11:19574860..19576001,19	K562	blood:
2	chr11:19092467..19093363-chr11:19280997..19281539,2	MCF-7	breast:
3	chr11:19092526..19093289-chr11:19182527..19183071,2	MCF-7	breast:
4	chr11:19092311..19093429-chr11:19574985..19576236,16	MCF-7	breast:
5	chr11:19092805..19093359-chr11:19763994..19764827,2	MCF-7	breast:
6	chr11:19092605..19093423-chr11:19578784..19579949,4	MCF-7	breast:
7	chr10:35195660..35196180-chr11:19092642..19093348,2	MCF-7	breast:
8	chr11:18948757..18949726-chr11:19092570..19093333,3	MCF-7	breast:
9	chr11:19092474..19093535-chr11:19131007..19132483,9	MCF-7	breast:
10	chr11:19092484..19094846-chr11:19096156..19098835,2	MCF-7	breast:
11	chr11:19092510..19093247-chr11:19579344..19580002,2	MCF-7	breast:
12	chr11:19092362..19093374-chr11:19131560..19132799,3	MCF-7	breast:
13	chr10:35195660..35196160-chr11:19092631..19093233,2	MCF-7	breast:
14	chr11:19092701..19093408-chr11:19575271..19576064,4	MCF-7	breast:
15	chr11:19092645..19093311-chr5:141695576..141696096,4	MCF-7	breast:
16	chr11:19092482..19093281-chr11:19347628..19348265,2	MCF-7	breast:
17	chr11:19092338..19093322-chr11:19281072..19281919,3	K562	blood:

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1503503	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs16936115	0.93[ASN][1000 genomes]
rs2292087	1.00[MEX][hapmap]
rs3934970	0.95[ASN][1000 genomes]
rs56946079	0.94[ASN][1000 genomes]
rs57666278	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58208423	0.84[ASN][1000 genomes]
rs59246389	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59630455	0.94[ASN][1000 genomes]
rs60304302	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60767473	0.90[ASN][1000 genomes]
rs6483578	0.85[ASN][1000 genomes]
rs924750	0.85[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv870101	chr11:19037931-19093952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19091000-19094000	Weak transcription	Pancreas	Pancrea
2	chr11:19091600-19094000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:19092600-19093200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:19092800-19093200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:19092800-19093200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:19092800-19093200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:19092800-19093200	Enhancers	Adipose Nuclei	Adipose
8	chr11:19092800-19093200	Active TSS	Brain Anterior Caudate	brain
9	chr11:19092800-19093200	Active TSS	Brain Hippocampus Middle	brain
10	chr11:19092800-19093200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
11	chr11:19092800-19093400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:19092800-19093400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr11:19092800-19093400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr11:19092800-19093400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:19093000-19093200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:19093000-19093200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:19093000-19093200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr11:19093000-19093200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:19093000-19093200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr11:19093000-19093200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:19093000-19093200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:19093000-19093200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr11:19093000-19093200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
24	chr11:19093000-19093200	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr11:19093000-19093200	Flanking Active TSS	Fetal Muscle Trunk	muscle
26	chr11:19093000-19093200	Flanking Active TSS	Ovary	ovary
27	chr11:19093000-19093200	Active TSS	Right Atrium	heart
28	chr11:19093000-19093200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:19093000-19093200	Enhancers	GM12878-XiMat	blood
30	chr11:19093000-19093200	Bivalent Enhancer	HepG2	liver
31	chr11:19093000-19093200	Flanking Active TSS	HUVEC	blood vessel
32	chr11:19093000-19093200	Flanking Active TSS	NHEK	skin
33	chr11:19093000-19093400	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr11:19093000-19093400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:19093000-19093400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:19093000-19093400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:19093000-19093400	Enhancers	Fetal Intestine Large	intestine
38	chr11:19093000-19093400	Enhancers	Fetal Intestine Small	intestine
39	chr11:19093000-19093400	Active TSS	Rectal Smooth Muscle	rectum
40	chr11:19093000-19093600	Enhancers	Fetal Muscle Leg	muscle
41	chr11:19093000-19093600	Active TSS	A549	lung
42	chr11:19093000-19093600	Enhancers	K562	blood
43	chr11:19093000-19093600	Active TSS	Osteobl	bone
44	chr11:19093000-19095800	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr11:19093000-19095800	Enhancers	Rectal Mucosa Donor 31	rectum

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