Variant report

Variant	rs3934970
Chromosome Location	chr11:19101951-19101952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19101141..19102914-chr11:19106636..19109089,2	MCF-7	breast:
2	chr11:19101207..19103376-chr11:19137461..19139475,2	MCF-7	breast:
3	chr11:19100832..19103167-chr11:19106343..19107943,2	K562	blood:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10833055	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1503503	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16936075	0.95[ASN][1000 genomes]
rs16936113	0.97[EUR][1000 genomes]
rs16936115	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56946079	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57666278	0.99[ASN][1000 genomes]
rs58208423	0.87[ASN][1000 genomes]
rs59246389	0.97[ASN][1000 genomes]
rs59630455	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60304302	0.99[ASN][1000 genomes]
rs60767473	0.92[ASN][1000 genomes]
rs61056306	0.97[EUR][1000 genomes]
rs6483578	0.87[ASN][1000 genomes]
rs924750	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19095200-19104000	Weak transcription	Esophagus	oesophagus
2	chr11:19096200-19102200	Weak transcription	Pancreas	Pancrea
3	chr11:19097000-19102400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:19098200-19103600	Enhancers	HUVEC	blood vessel
5	chr11:19098800-19102800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:19099000-19102400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:19099000-19102800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:19099200-19102000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:19099400-19102800	Enhancers	NHDF-Ad	bronchial
10	chr11:19100400-19102600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:19100600-19102000	Weak transcription	Fetal Heart	heart
12	chr11:19100600-19102800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:19100600-19102800	Enhancers	Osteobl	bone
14	chr11:19100600-19103000	Enhancers	NHEK	skin
15	chr11:19100800-19102000	Enhancers	NHLF	lung
16	chr11:19100800-19102400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:19100800-19102400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:19100800-19102400	Enhancers	HSMM	muscle
19	chr11:19100800-19102400	Enhancers	NH-A	brain
20	chr11:19100800-19102600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:19100800-19102600	Enhancers	HMEC	breast
22	chr11:19100800-19102800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:19100800-19103000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:19101000-19102200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr11:19101000-19102400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr11:19101000-19102800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:19101200-19102000	Weak transcription	Brain Anterior Caudate	brain
28	chr11:19101600-19102200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:19101600-19102200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:19101600-19102600	Enhancers	Brain Substantia Nigra	brain
31	chr11:19101800-19102400	Enhancers	Brain Angular Gyrus	brain
32	chr11:19101800-19102800	Enhancers	Brain Hippocampus Middle	brain

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