Variant report

Variant	rs1503503
Chromosome Location	chr11:19082029-19082030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10833055	0.93[EUR][1000 genomes]
rs16936075	0.91[ASN][1000 genomes]
rs16936113	0.90[EUR][1000 genomes]
rs16936115	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3934970	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56946079	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57666278	0.85[ASN][1000 genomes]
rs59246389	0.86[ASN][1000 genomes]
rs59630455	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60304302	0.85[ASN][1000 genomes]
rs60767473	0.84[ASN][1000 genomes]
rs61056306	0.90[EUR][1000 genomes]
rs6483578	0.81[JPT][hapmap]
rs924750	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv870101	chr11:19037931-19093952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19081200-19083600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:19081400-19083400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:19081400-19083800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr11:19081400-19083800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:19081800-19083600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:19081800-19083800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr11:19082000-19083000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr11:19082000-19083200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:19082000-19083400	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:19082000-19083400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr11:19082000-19083600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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