Variant report

Variant	rs60767473
Chromosome Location	chr11:19133062-19133063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1503503	0.84[ASN][1000 genomes]
rs16936075	0.90[ASN][1000 genomes]
rs16936115	0.93[ASN][1000 genomes]
rs3934970	0.92[ASN][1000 genomes]
rs56946079	0.86[ASN][1000 genomes]
rs57666278	0.93[ASN][1000 genomes]
rs58208423	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59246389	0.95[ASN][1000 genomes]
rs59630455	0.86[ASN][1000 genomes]
rs60304302	0.93[ASN][1000 genomes]
rs6483578	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs924750	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19125000-19138600	Weak transcription	Gastric	stomach
2	chr11:19129400-19133400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:19130800-19133400	Enhancers	Fetal Heart	heart
4	chr11:19131600-19138000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:19131600-19138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:19132000-19138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:19132200-19138000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:19132400-19137800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:19132800-19138000	Weak transcription	Pancreas	Pancrea
10	chr11:19133000-19133400	Enhancers	Fetal Brain Female	brain
11	chr11:19133000-19133600	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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