Variant report

Variant	rs59246389
Chromosome Location	chr11:19110952-19110953
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1503503	0.86[ASN][1000 genomes]
rs16936075	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16936115	0.99[ASN][1000 genomes]
rs3934970	0.97[ASN][1000 genomes]
rs56946079	0.89[ASN][1000 genomes]
rs57666278	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58208423	0.89[ASN][1000 genomes]
rs59630455	0.89[ASN][1000 genomes]
rs60304302	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60767473	0.95[ASN][1000 genomes]
rs6483578	0.89[ASN][1000 genomes]
rs924750	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19104800-19111800	Weak transcription	Esophagus	oesophagus
2	chr11:19108200-19113400	Enhancers	HUVEC	blood vessel
3	chr11:19109800-19111800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:19110000-19112000	Weak transcription	NH-A	brain
5	chr11:19110000-19115400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:19110400-19112800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:19110600-19112000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:19110800-19111200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:19110800-19111400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:19110800-19112000	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links