Variant report

Variant	rs7103229
Chromosome Location	chr11:101910246-101910247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10750626	0.92[AFR][1000 genomes]
rs10750629	0.88[AFR][1000 genomes]
rs10750630	0.88[AFR][1000 genomes]
rs10791552	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10791553	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10791555	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10791556	0.90[AFR][1000 genomes]
rs10791557	0.85[AFR][1000 genomes]
rs10791558	0.87[AFR][1000 genomes]
rs10895241	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895244	0.82[AFR][1000 genomes]
rs10895246	0.87[AFR][1000 genomes]
rs10895248	0.89[AFR][1000 genomes]
rs10895249	0.85[AFR][1000 genomes]
rs10895251	0.91[AFR][1000 genomes]
rs10895252	0.84[AFR][1000 genomes]
rs10895253	0.86[AFR][1000 genomes]
rs11225112	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11225120	0.84[AFR][1000 genomes]
rs11225122	0.87[AFR][1000 genomes]
rs11225124	0.91[AFR][1000 genomes]
rs11225125	0.82[AFR][1000 genomes]
rs11225128	0.81[AFR][1000 genomes]
rs11601438	0.89[AFR][1000 genomes]
rs12146647	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12362732	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28826437	0.81[AFR][1000 genomes]
rs6590944	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs67767733	0.85[AFR][1000 genomes]
rs7116677	0.85[AFR][1000 genomes]
rs7928958	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7930416	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7930613	0.84[AFR][1000 genomes]
rs7943720	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7943740	0.86[AFR][1000 genomes]
rs7945871	0.84[AFR][1000 genomes]
rs7951994	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3351862	chr11:101897791-101931442	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101899800-101918000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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