Variant report

Variant	rs10895241
Chromosome Location	chr11:101919831-101919832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10750626	0.87[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10750629	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10750630	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10791552	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791553	0.96[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10791555	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10791556	0.87[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10791557	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10791558	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10895244	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10895246	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895248	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895249	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895251	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895252	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10895253	0.82[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10895254	0.88[EUR][1000 genomes]
rs11225112	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11225120	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11225122	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11225124	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11225125	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11225128	0.82[EUR][1000 genomes]
rs11601438	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12146647	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12362732	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1942689	0.82[YRI][hapmap]
rs28826437	0.85[EUR][1000 genomes]
rs6590944	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67475520	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67767733	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7103229	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106907	0.87[EUR][1000 genomes]
rs7116677	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7928958	0.95[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7930416	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7930613	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7937267	0.84[EUR][1000 genomes]
rs7943098	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7943720	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943740	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7945871	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7951994	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3351862	chr11:101897791-101931442	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101918600-101926600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:101918800-101920000	Enhancers	HUVEC	blood vessel
3	chr11:101919000-101920000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:101919000-101921800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:101919000-101933000	Weak transcription	Brain Anterior Caudate	brain
6	chr11:101919200-101920000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:101919200-101920000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:101919200-101920000	Enhancers	Fetal Lung	lung
9	chr11:101919200-101920000	Enhancers	NHEK	skin
10	chr11:101919200-101921400	Weak transcription	NHLF	lung
11	chr11:101919200-101932400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:101919200-101932600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:101919200-101934200	Weak transcription	HMEC	breast
14	chr11:101919400-101920000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:101919400-101920000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:101919400-101920000	Enhancers	NHDF-Ad	bronchial
17	chr11:101919400-101932200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:101919400-101935400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:101919400-101939800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:101919400-101944000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:101919400-101956800	Weak transcription	Osteobl	bone
22	chr11:101919600-101920000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:101919600-101920200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr11:101919800-101920000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:101919800-101920000	Enhancers	Fetal Kidney	kidney
26	chr11:101919800-101920000	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links