Variant report

Variant	rs7943098
Chromosome Location	chr11:101954774-101954775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10466638	0.80[CHB][hapmap]
rs10750626	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10750627	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10791553	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs10791554	0.82[CHB][hapmap]
rs10791556	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10791562	0.82[JPT][hapmap]
rs10895245	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs10895253	1.00[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs11225115	0.82[CHB][hapmap]
rs12362732	0.87[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap]
rs6590945	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6590946	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7123006	0.82[JPT][hapmap]
rs7928958	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs7930416	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap]
rs7943720	0.90[CEU][hapmap];0.88[CHB][hapmap];0.89[YRI][hapmap]
rs7951994	0.95[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7943098	C11orf70	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101919400-101956800	Weak transcription	Osteobl	bone
2	chr11:101922400-101958000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:101944200-101956400	Weak transcription	Ovary	ovary
4	chr11:101945400-101956600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:101946600-101956800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:101951800-101955600	Weak transcription	HepG2	liver
7	chr11:101953600-101956600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:101954400-101955200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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