Variant report

Variant	rs10895245
Chromosome Location	chr11:101934205-101934206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101932617..101935029-chr11:101948645..101950301,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10160773	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10466638	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10750625	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10750626	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs10750627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750629	0.82[ASN][1000 genomes]
rs10791553	0.82[CEU][hapmap];0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs10791554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10791556	0.82[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs10791557	0.84[ASN][1000 genomes]
rs10791558	0.82[ASN][1000 genomes]
rs10791559	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10791560	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10791562	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791563	0.93[JPT][hapmap]
rs10895238	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10895243	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10895246	0.83[ASN][1000 genomes]
rs10895248	0.82[ASN][1000 genomes]
rs10895250	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10895253	0.81[JPT][hapmap]
rs10895256	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs10895266	0.84[YRI][hapmap]
rs11225114	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11225115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11225120	0.83[ASN][1000 genomes]
rs11225124	0.82[ASN][1000 genomes]
rs11601438	0.82[ASN][1000 genomes]
rs12362732	0.81[CEU][hapmap]
rs12365066	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1820453	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs1942684	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4754038	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6590945	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6590946	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106388	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7110790	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7111721	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116677	0.83[ASN][1000 genomes]
rs7123006	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7127954	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129562	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7928958	0.87[CEU][hapmap];0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs7930613	0.83[ASN][1000 genomes]
rs7934495	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7936168	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7943098	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7943740	0.83[ASN][1000 genomes]
rs7945871	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101919400-101935400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:101919400-101939800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:101919400-101944000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:101919400-101956800	Weak transcription	Osteobl	bone
5	chr11:101922400-101958000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:101926800-101935000	Weak transcription	Ovary	ovary
7	chr11:101933200-101935000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:101933600-101936000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:101934200-101935600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:101934200-101935800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:101934200-101935800	Enhancers	HMEC	breast
12	chr11:101934200-101936200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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