Variant report

Variant	rs10791559
Chromosome Location	chr11:101944113-101944114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160773	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10466638	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10750625	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10750626	0.83[ASN][1000 genomes]
rs10750627	0.89[CEU][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10750629	0.83[ASN][1000 genomes]
rs10791554	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10791556	0.83[ASN][1000 genomes]
rs10791557	0.83[ASN][1000 genomes]
rs10791558	0.83[ASN][1000 genomes]
rs10791560	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791562	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10895238	0.91[ASN][1000 genomes]
rs10895243	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10895245	0.89[CEU][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895246	0.84[ASN][1000 genomes]
rs10895248	0.83[ASN][1000 genomes]
rs10895250	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11225114	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225115	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225120	0.84[ASN][1000 genomes]
rs11225124	0.83[ASN][1000 genomes]
rs11601438	0.83[ASN][1000 genomes]
rs12365066	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1942684	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754038	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6590945	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6590946	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7110790	0.89[ASN][1000 genomes]
rs7111721	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7116677	0.84[ASN][1000 genomes]
rs7123006	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7127954	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7129562	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930613	0.84[ASN][1000 genomes]
rs7934495	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7936168	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7943740	0.84[ASN][1000 genomes]
rs7945871	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101919400-101956800	Weak transcription	Osteobl	bone
2	chr11:101922400-101958000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:101938000-101952200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:101943600-101944400	ZNF genes & repeats	Pancreas	Pancrea
5	chr11:101943800-101944600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:101944000-101945000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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