Variant report

Variant	rs7110790
Chromosome Location	chr11:101909363-101909364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10160773	0.82[ASN][1000 genomes]
rs10466638	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10750625	0.94[ASN][1000 genomes]
rs10750627	0.86[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10791553	0.81[JPT][hapmap]
rs10791554	0.86[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.94[ASN][1000 genomes]
rs10791559	0.89[ASN][1000 genomes]
rs10791560	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10791562	0.80[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs10791563	1.00[JPT][hapmap]
rs10895238	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895245	0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10895250	0.87[ASN][1000 genomes]
rs10895256	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs11225114	0.91[ASN][1000 genomes]
rs11225115	0.86[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs12365066	0.83[ASN][1000 genomes]
rs12806276	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1820453	1.00[JPT][hapmap]
rs1942684	0.87[ASN][1000 genomes]
rs2212759	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754038	0.90[ASN][1000 genomes]
rs6590944	0.80[ASN][1000 genomes]
rs6590945	0.86[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs6590946	0.86[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7106388	0.93[JPT][hapmap]
rs7111721	0.91[ASN][1000 genomes]
rs7123006	0.80[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7127954	0.90[ASN][1000 genomes]
rs7129562	0.86[ASN][1000 genomes]
rs7928958	0.81[JPT][hapmap]
rs7934495	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3351862	chr11:101897791-101931442	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7110790	BIRC2	cis	parietal	SCAN
rs7110790	C11orf70	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101899800-101918000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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