Variant report

Variant	rs10895256
Chromosome Location	chr11:101978404-101978405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:101978314-101978514	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
YAP1	TF binding region
ENSG00000260008	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10466638	1.00[JPT][hapmap]
rs10750627	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs10750631	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791553	0.81[JPT][hapmap]
rs10791554	0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs10791562	0.87[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs10791563	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs10895245	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs10895255	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10895266	0.82[MEX][hapmap];0.86[YRI][hapmap]
rs11225115	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs11225132	0.92[EUR][1000 genomes]
rs11225151	0.82[MEX][hapmap]
rs1365330	0.82[MEX][hapmap]
rs1365331	0.90[EUR][1000 genomes]
rs1426395	0.85[EUR][1000 genomes]
rs1426398	0.81[CEU][hapmap];0.98[GIH][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1549496	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1820453	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2003357	0.82[MEX][hapmap]
rs2033082	0.81[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs2033083	0.81[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs3752685	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824930	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3890538	0.82[MEX][hapmap]
rs61918360	0.85[EUR][1000 genomes]
rs61918361	0.86[EUR][1000 genomes]
rs6590945	0.81[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap]
rs6590946	0.81[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap]
rs6590949	0.82[MEX][hapmap]
rs7105334	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106388	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7108698	0.82[MEX][hapmap]
rs7123006	0.87[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs7928958	0.81[JPT][hapmap]
rs7931899	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938172	0.82[MEX][hapmap]
rs9787758	0.85[CEU][hapmap];0.93[GIH][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs983112	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101968000-101980400	Weak transcription	Right Atrium	heart
2	chr11:101976400-101979800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:101978200-101979400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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