Variant report

Variant	rs2033083
Chromosome Location	chr11:101984628-101984629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101983625..101985625-chr11:101986224..101988085,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10750631	0.84[EUR][1000 genomes]
rs10791563	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10895255	0.89[EUR][1000 genomes]
rs10895256	0.81[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs11225132	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1365331	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426395	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1426398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1549496	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1820453	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2033081	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2033082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3752685	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3824930	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61918360	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61918361	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7105334	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7106388	0.85[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7128788	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7931899	0.91[EUR][1000 genomes]
rs7932563	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9787758	0.89[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs983112	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101980200-101985000	Active TSS	Aorta	Aorta
2	chr11:101980400-101984800	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr11:101980400-101984800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:101980400-101984800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:101980400-101984800	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr11:101980400-101984800	Active TSS	NHDF-Ad	bronchial
7	chr11:101980600-101984800	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr11:101980600-101984800	Active TSS	HepG2	liver
9	chr11:101980600-101984800	Active TSS	NHLF	lung
10	chr11:101980800-101984800	Active TSS	HMEC	breast
11	chr11:101981200-101984800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:101982000-101984800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:101982000-101984800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:101982000-101986400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:101982800-101989200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:101983400-101984800	Weak transcription	Gastric	stomach
17	chr11:101983400-101998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:101983600-101984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:101983600-101984800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:101983600-101984800	Active TSS	Adipose Nuclei	Adipose
21	chr11:101983600-101984800	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:101983600-101984800	Weak transcription	Left Ventricle	heart
23	chr11:101983600-101984800	Weak transcription	Lung	lung
24	chr11:101983600-101985000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr11:101983600-101985200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:101983600-101985200	Enhancers	Rectal Smooth Muscle	rectum
27	chr11:101983600-101985400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr11:101983600-101985400	Enhancers	Fetal Heart	heart
29	chr11:101983600-101985400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:101983600-101986000	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:101983600-101987000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:101983600-101989200	Weak transcription	Esophagus	oesophagus
33	chr11:101983600-101990800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:101983600-101990800	Weak transcription	Brain Anterior Caudate	brain
35	chr11:101983600-101990800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:101983600-101990800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:101983600-101991000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:101983600-101998000	Weak transcription	Right Ventricle	heart
39	chr11:101983600-101998200	Weak transcription	Colonic Mucosa	Colon
40	chr11:101983600-102014800	Weak transcription	Pancreas	Pancrea
41	chr11:101983800-101984800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:101983800-101984800	Enhancers	Fetal Intestine Small	intestine
43	chr11:101983800-101985000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:101983800-101985200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr11:101983800-101986000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:101983800-101986000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:101984000-101984800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:101984000-101984800	Weak transcription	Placenta	Placenta
49	chr11:101984000-101987200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:101984000-101987400	Enhancers	Placenta Amnion	Placenta Amnion

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