Variant report

Variant	rs3824930
Chromosome Location	chr11:101985302-101985303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101983625..101985625-chr11:101986224..101988085,2	K562	blood:
2	chr11:101985245..101987605-chr11:102138237..102140832,2	MCF-7	breast:
3	chr11:101984887..101986803-chr11:101989514..101991065,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10750631	0.85[EUR][1000 genomes]
rs10791563	0.88[EUR][1000 genomes]
rs10895255	0.90[EUR][1000 genomes]
rs10895256	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11225132	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1365331	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1426395	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1426398	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1549496	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1820453	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2033081	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2033083	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3752685	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61918360	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61918361	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105334	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7106388	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7128788	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7931899	0.92[EUR][1000 genomes]
rs7932563	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9787758	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs983112	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101982000-101986400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:101982800-101989200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:101983400-101998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:101983600-101985400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:101983600-101985400	Enhancers	Fetal Heart	heart
6	chr11:101983600-101985400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:101983600-101986000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:101983600-101987000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:101983600-101989200	Weak transcription	Esophagus	oesophagus
10	chr11:101983600-101990800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:101983600-101990800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:101983600-101990800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:101983600-101990800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:101983600-101991000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:101983600-101998000	Weak transcription	Right Ventricle	heart
16	chr11:101983600-101998200	Weak transcription	Colonic Mucosa	Colon
17	chr11:101983600-102014800	Weak transcription	Pancreas	Pancrea
18	chr11:101983800-101986000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:101983800-101986000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:101984000-101987200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:101984000-101987400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr11:101984000-101991600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:101984200-101986000	Weak transcription	Liver	Liver
24	chr11:101984200-101986000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:101984200-101986400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:101984400-101985400	Enhancers	A549	lung
27	chr11:101984400-101988600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:101984400-101991600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr11:101984600-101986400	Genic enhancers	Hela-S3	cervix
30	chr11:101984600-101987400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:101984600-101988200	Genic enhancers	NH-A	brain
32	chr11:101984800-101985400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:101984800-101985400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:101984800-101985400	Flanking Active TSS	HepG2	liver
35	chr11:101984800-101985600	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
36	chr11:101984800-101985800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:101984800-101985800	Genic enhancers	Fetal Intestine Large	intestine
38	chr11:101984800-101987400	Strong transcription	Placenta	Placenta
39	chr11:101984800-101988000	Genic enhancers	Fetal Lung	lung
40	chr11:101984800-101988800	Genic enhancers	HSMM	muscle
41	chr11:101984800-101991600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:101985000-101985600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:101985000-101985800	Genic enhancers	H1 Cell Line	embryonic stem cell
44	chr11:101985000-101986000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:101985000-101986600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
46	chr11:101985000-101987000	Genic enhancers	Adipose Nuclei	Adipose
47	chr11:101985000-101987400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:101985000-101988800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:101985000-101989200	Weak transcription	Fetal Stomach	stomach
50	chr11:101985000-101991400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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