Variant report

Variant	rs61918361
Chromosome Location	chr11:102000753-102000754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10750631	0.80[EUR][1000 genomes]
rs10791563	0.84[EUR][1000 genomes]
rs10791565	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10895255	0.85[EUR][1000 genomes]
rs10895256	0.86[EUR][1000 genomes]
rs10895262	0.80[AFR][1000 genomes]
rs10895263	0.80[AMR][1000 genomes]
rs11225132	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11225146	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11225147	0.80[AFR][1000 genomes]
rs11603468	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1365330	0.94[AFR][1000 genomes]
rs1365331	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1426395	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1426398	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1549496	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1820453	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2003357	0.83[AFR][1000 genomes]
rs2033083	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3752685	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3824930	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3890538	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4442513	0.81[AFR][1000 genomes]
rs61918360	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7105334	0.87[EUR][1000 genomes]
rs7106388	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7108698	0.90[AFR][1000 genomes]
rs7128788	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7931899	0.87[EUR][1000 genomes]
rs7932563	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9787758	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs983112	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101983600-102014800	Weak transcription	Pancreas	Pancrea
2	chr11:101985200-102009200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:101988800-102009000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:101988800-102009600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:101989600-102015200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:101991000-102009000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:101991000-102010000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:101991600-102002200	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:101991600-102006000	Weak transcription	NHLF	lung
10	chr11:101991600-102008800	Weak transcription	HSMMtube	muscle
11	chr11:101991600-102012400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:101991600-102015200	Weak transcription	Fetal Kidney	kidney
13	chr11:101991600-102015600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:101991800-102001000	Weak transcription	HSMM	muscle
15	chr11:101991800-102001400	Strong transcription	Fetal Stomach	stomach
16	chr11:101992600-102003600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:101992800-102008800	Weak transcription	NHDF-Ad	bronchial
18	chr11:101995400-102002200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:101995800-102001000	Weak transcription	Fetal Lung	lung
20	chr11:101996000-102008000	Weak transcription	Esophagus	oesophagus
21	chr11:101996000-102009000	Weak transcription	Aorta	Aorta
22	chr11:101997000-102006200	Weak transcription	Hela-S3	cervix
23	chr11:101997200-102001200	Weak transcription	NHEK	skin
24	chr11:101997200-102001600	Weak transcription	Fetal Heart	heart
25	chr11:101997200-102001600	Weak transcription	NH-A	brain
26	chr11:101997400-102002000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:101997600-102001600	Weak transcription	HMEC	breast
28	chr11:101997600-102004400	Weak transcription	Fetal Intestine Large	intestine
29	chr11:101997600-102009000	Weak transcription	A549	lung
30	chr11:101997600-102009000	Weak transcription	Osteobl	bone
31	chr11:101998400-102001200	Weak transcription	Adipose Nuclei	Adipose
32	chr11:101998400-102002000	Weak transcription	Right Ventricle	heart
33	chr11:101998400-102005400	Weak transcription	Left Ventricle	heart
34	chr11:101998400-102006000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:101998600-102000800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:101998600-102001200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:101998600-102001200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:101998600-102001600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:101998600-102001800	Weak transcription	Psoas Muscle	Psoas
40	chr11:101998600-102006000	Weak transcription	Gastric	stomach
41	chr11:101998600-102033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:101998600-102034200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr11:101998800-102001000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:101998800-102001600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:101998800-102001800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:101998800-102004000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:101998800-102008000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:101998800-102009200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:101998800-102009800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:101998800-102014400	Weak transcription	Liver	Liver

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