Variant report

Variant	rs7932563
Chromosome Location	chr11:101987847-101987848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101981472..101985692-chr11:101986825..101990078,4	MCF-7	breast:
2	chr11:101983625..101985625-chr11:101986224..101988085,2	K562	blood:

Variant related genes	Relation type
ENSG00000137693	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10750632	0.90[AFR][1000 genomes]
rs10895258	0.86[AFR][1000 genomes]
rs10895259	0.92[AFR][1000 genomes]
rs11225132	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11225134	0.93[AFR][1000 genomes]
rs11225135	0.86[AFR][1000 genomes]
rs11606471	0.93[AFR][1000 genomes]
rs1365331	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1426395	0.80[EUR][1000 genomes]
rs1426398	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1549496	0.85[EUR][1000 genomes]
rs1820453	0.82[EUR][1000 genomes]
rs1942688	0.93[AFR][1000 genomes]
rs1942689	0.91[AFR][1000 genomes]
rs1942690	0.93[AFR][1000 genomes]
rs1942691	0.93[AFR][1000 genomes]
rs2033081	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2033083	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3752685	0.82[EUR][1000 genomes]
rs3824930	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61918361	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7106388	0.81[EUR][1000 genomes]
rs7128788	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928547	0.92[AFR][1000 genomes]
rs9787758	0.82[EUR][1000 genomes]
rs983112	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101982800-101989200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:101983400-101998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:101983600-101989200	Weak transcription	Esophagus	oesophagus
4	chr11:101983600-101990800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:101983600-101990800	Weak transcription	Brain Anterior Caudate	brain
6	chr11:101983600-101990800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:101983600-101990800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:101983600-101991000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:101983600-101998000	Weak transcription	Right Ventricle	heart
10	chr11:101983600-101998200	Weak transcription	Colonic Mucosa	Colon
11	chr11:101983600-102014800	Weak transcription	Pancreas	Pancrea
12	chr11:101984000-101991600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:101984400-101988600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:101984400-101991600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr11:101984600-101988200	Genic enhancers	NH-A	brain
16	chr11:101984800-101988000	Genic enhancers	Fetal Lung	lung
17	chr11:101984800-101988800	Genic enhancers	HSMM	muscle
18	chr11:101984800-101991600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:101985000-101988800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:101985000-101989200	Weak transcription	Fetal Stomach	stomach
21	chr11:101985000-101991400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:101985200-101988200	Genic enhancers	NHDF-Ad	bronchial
23	chr11:101985200-101988600	Enhancers	Fetal Intestine Small	intestine
24	chr11:101985200-101989200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:101985200-101989200	Weak transcription	Lung	lung
26	chr11:101985200-101989800	Weak transcription	Fetal Brain Male	brain
27	chr11:101985200-101998000	Weak transcription	Gastric	stomach
28	chr11:101985200-102009200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:101985600-101988200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:101985600-101991200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:101985800-101990800	Enhancers	Fetal Intestine Large	intestine
32	chr11:101986000-101988200	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr11:101986000-101988200	Genic enhancers	NHEK	skin
34	chr11:101986000-101988400	Enhancers	Liver	Liver
35	chr11:101986000-101991000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr11:101986000-101991600	Enhancers	Colon Smooth Muscle	Colon
37	chr11:101986200-101988000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:101986200-101991600	Enhancers	Stomach Mucosa	stomach
39	chr11:101986400-101989400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr11:101986400-101989600	Enhancers	Fetal Kidney	kidney
41	chr11:101986400-101989600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr11:101986600-101988200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:101986600-101988400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:101986600-101988400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:101986600-101989800	Weak transcription	Aorta	Aorta
46	chr11:101986600-101990800	Flanking Active TSS	A549	lung
47	chr11:101986800-101988000	Genic enhancers	Hela-S3	cervix
48	chr11:101986800-101988200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:101986800-101988200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:101986800-101988200	Weak transcription	Rectal Smooth Muscle	rectum

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