Variant report

Variant	rs10895238
Chromosome Location	chr11:101912659-101912660
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101907563..101909226-chr11:101910658..101913238,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10160773	0.84[ASN][1000 genomes]
rs10466638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10750625	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10750626	0.83[CHB][hapmap]
rs10750627	0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10791553	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10791554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10791559	0.91[ASN][1000 genomes]
rs10791560	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10791562	0.94[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs10791563	1.00[JPT][hapmap]
rs10895243	0.80[ASN][1000 genomes]
rs10895245	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10895250	0.89[ASN][1000 genomes]
rs10895256	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11225114	0.93[ASN][1000 genomes]
rs11225115	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs12365066	0.85[ASN][1000 genomes]
rs12806276	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1820453	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1942684	0.89[ASN][1000 genomes]
rs2212759	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754038	0.92[ASN][1000 genomes]
rs6590944	0.82[ASN][1000 genomes]
rs6590945	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs6590946	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs7106388	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs7110790	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111721	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7123006	0.88[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs7127954	0.92[ASN][1000 genomes]
rs7129562	0.88[ASN][1000 genomes]
rs7928958	0.82[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7934495	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7943098	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3351862	chr11:101897791-101931442	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101899800-101918000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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