Variant report

Variant	rs7103878
Chromosome Location	chr11:16840040-16840041
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:66)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:66 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:16839859-16840145	HepG2	liver:	n/a	n/a
2	CTCF	chr11:16839960-16840110	HepG2	liver:	n/a	n/a
3	JUND	chr11:16839925-16840106	HepG2	liver:	n/a	n/a
4	CTCF	chr11:16839982-16840096	K562	blood:	n/a	n/a
5	CTCF	chr11:16839920-16840070	HEEpiC	esophagus:	n/a	n/a
6	CTCF	chr11:16839920-16840070	HA-sp	spinal cord:	n/a	n/a
7	CTCF	chr11:16839965-16840132	HUVEC	blood vessel:	n/a	n/a
8	MAFK	chr11:16839895-16840148	HepG2	liver:	n/a	n/a
9	CTCF	chr11:16840000-16840150	MCF-7	breast:	n/a	n/a
10	CTCF	chr11:16840020-16840170	HepG2	liver:	n/a	n/a
11	FOSL2	chr11:16839871-16840137	A549	lung:	n/a	chr11:16840001-16840012
12	CTCF	chr11:16839937-16840114	K562	blood:	n/a	n/a
13	CTCF	chr11:16839926-16840218	A549	lung:	n/a	n/a
14	CTCF	chr11:16839930-16840058	GM12878	blood:	n/a	n/a
15	CTCF	chr11:16839997-16840101	A549	lung:	n/a	n/a
16	CTCF	chr11:16840000-16840150	HBMEC	blood vessel:	n/a	n/a
17	FOSL2	chr11:16839748-16840270	A549	lung:	n/a	chr11:16840001-16840012
18	MAFF	chr11:16839945-16840100	HepG2	liver:	n/a	n/a
19	MAX	chr11:16839898-16840092	K562	blood:	n/a	n/a
20	FOXA1	chr11:16839790-16840243	HepG2	liver:	n/a	n/a
21	CTCF	chr11:16840040-16840084	MCF-7	breast:	n/a	n/a
22	FOXA1	chr11:16839800-16840229	HepG2	liver:	n/a	n/a
23	FOSL2	chr11:16839706-16840256	HepG2	liver:	n/a	chr11:16840001-16840012
24	CTCF	chr11:16839980-16840130	HCPEpiC	choroid plexus:	n/a	n/a
25	CTCF	chr11:16839960-16840110	SAEC	small airway:	n/a	n/a
26	FOXA1	chr11:16839735-16840231	HepG2	liver:	n/a	n/a
27	MAX	chr11:16839808-16840261	MCF-7	breast:	n/a	n/a
28	FOXA2	chr11:16839696-16840366	A549	lung:	n/a	n/a
29	CTCF	chr11:16839920-16840070	HMF	breast:	n/a	n/a
30	CTCF	chr11:16839997-16840096	MCF-7	breast:	n/a	n/a
31	CTCF	chr11:16839960-16840110	HCFaa	heart:	n/a	n/a
32	USF1	chr11:16839887-16840201	A549	lung:	n/a	n/a
33	FOXA1	chr11:16839688-16840159	HepG2	liver:	n/a	n/a
34	RAD21	chr11:16839815-16840189	HepG2	liver:	n/a	n/a
35	CTCF	chr11:16840020-16840170	HPF	lung:	n/a	n/a
36	SMC3	chr11:16839872-16840167	HepG2	liver:	n/a	n/a
37	CTCF	chr11:16839971-16840126	HepG2	liver:	n/a	n/a
38	CTCF	chr11:16839940-16840090	HCM	heart:	n/a	n/a
39	CTCF	chr11:16839920-16840210	HAc	cerebellar:	n/a	n/a
40	CEBPZ	chr11:16839944-16840072	HepG2	liver:	n/a	n/a
41	RAD21	chr11:16839873-16840128	HepG2	liver:	n/a	n/a
42	RAD21	chr11:16839875-16840168	HepG2	liver:	n/a	n/a
43	FOSL2	chr11:16839772-16840134	HepG2	liver:	n/a	chr11:16840001-16840012
44	CTCF	chr11:16839986-16840102	GM12892	blood:	n/a	n/a
45	USF1	chr11:16839941-16840099	HepG2	liver:	n/a	n/a
46	FOXA2	chr11:16839760-16840227	A549	lung:	n/a	n/a
47	MAX	chr11:16839757-16840300	HepG2	liver:	n/a	n/a
48	MAX	chr11:16839924-16840162	HepG2	liver:	n/a	n/a
49	MXI1	chr11:16839870-16840223	HepG2	liver:	n/a	n/a
50	MAX	chr11:16839641-16840345	A549	lung:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16809638..16810598-chr11:16839499..16840428,3	MCF-7	breast:
2	chr11:16810042..16810543-chr11:16839958..16840526,2	MCF-7	breast:
3	chr11:16806773..16807805-chr11:16839328..16840528,4	MCF-7	breast:

No data

Variant related genes	Relation type
PLEKHA7	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55907984	1.00[AMR][1000 genomes]
rs56226847	1.00[AMR][1000 genomes]
rs7925274	0.83[YRI][hapmap]
rs7940814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16799000-16842200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:16803800-16842000	Weak transcription	Fetal Kidney	kidney
3	chr11:16813200-16871400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:16822800-16840200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:16822800-16840200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:16823000-16871400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:16826600-16841800	Weak transcription	Hela-S3	cervix
8	chr11:16826600-16842000	Weak transcription	Ovary	ovary
9	chr11:16828400-16842000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:16829600-16840200	Strong transcription	Duodenum Mucosa	Duodenum
11	chr11:16830800-16840200	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:16832400-16841600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:16832400-16842000	Weak transcription	HSMM	muscle
14	chr11:16832600-16841800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:16833600-16847400	Weak transcription	Aorta	Aorta
16	chr11:16834800-16840400	Strong transcription	Fetal Intestine Large	intestine
17	chr11:16834800-16847400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:16835200-16841800	Strong transcription	Fetal Intestine Small	intestine
19	chr11:16835800-16841600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:16836000-16861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:16836800-16841600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:16836800-16842000	Weak transcription	Fetal Thymus	thymus
23	chr11:16836800-16842000	Weak transcription	Psoas Muscle	Psoas
24	chr11:16836800-16842200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:16837000-16841000	Weak transcription	HSMMtube	muscle
26	chr11:16837000-16841800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:16837000-16841800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:16837000-16841800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:16837000-16842000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:16837000-16842000	Weak transcription	Spleen	Spleen
31	chr11:16837000-16842200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:16837000-16846400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:16837200-16842000	Weak transcription	Brain Angular Gyrus	brain
34	chr11:16837200-16848600	Weak transcription	Brain Germinal Matrix	brain
35	chr11:16837400-16842000	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:16837400-16842000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:16837600-16842000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:16837800-16841800	Weak transcription	Stomach Mucosa	stomach
39	chr11:16838200-16840200	Enhancers	Fetal Brain Male	brain
40	chr11:16838200-16841600	Weak transcription	HMEC	breast
41	chr11:16838200-16842000	Weak transcription	Liver	Liver
42	chr11:16838200-16842200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr11:16838200-16842200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:16838200-16847400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:16838400-16841800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:16838600-16840200	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr11:16838600-16840200	Enhancers	Left Ventricle	heart
48	chr11:16838600-16842000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:16838600-16842200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:16838800-16840200	Enhancers	Right Ventricle	heart

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