Variant report

Variant	rs7104206
Chromosome Location	chr11:3882609-3882610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3880021..3883743-chr11:3910117..3913050,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11030210	0.82[CEU][hapmap]
rs4243965	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs4243966	0.85[EUR][1000 genomes]
rs4910586	0.83[EUR][1000 genomes]
rs7116483	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1803195	chr11:3806490-3924156	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv1046325	chr11:3856201-3895148	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1039059	chr11:3856201-3909415	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
10	nsv540910	chr11:3856201-3909415	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
11	nsv1051580	chr11:3856201-3924216	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
12	nsv1043265	chr11:3856201-3926407	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
13	nsv896894	chr11:3859856-3888234	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
14	nsv869701	chr11:3879297-3973762	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3877600-3883800	Flanking Active TSS	Primary T cells from cord blood	blood
2	chr11:3878000-3883000	Weak transcription	Fetal Intestine Large	intestine
3	chr11:3878000-3883200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr11:3878000-3883200	Enhancers	Fetal Heart	heart
5	chr11:3878200-3886800	Weak transcription	NHLF	lung
6	chr11:3878400-3883200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr11:3878800-3883200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr11:3879000-3883800	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr11:3879200-3883400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:3879200-3883400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:3879200-3883400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:3879200-3883400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:3879400-3883200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:3879400-3886600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:3879400-3887200	Weak transcription	Fetal Brain Female	brain
16	chr11:3879600-3883600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:3879800-3883800	Enhancers	Fetal Muscle Leg	muscle
18	chr11:3880400-3883000	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:3880600-3886800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:3881000-3882800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:3881000-3882800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:3881000-3883000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:3881000-3883200	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:3881000-3883400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:3881000-3883800	Enhancers	HepG2	liver
26	chr11:3881000-3884000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr11:3881000-3884200	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:3881000-3885200	Weak transcription	Aorta	Aorta
29	chr11:3881000-3886000	Weak transcription	HMEC	breast
30	chr11:3881000-3886600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:3881000-3886800	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:3881000-3888400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:3881200-3883000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:3881200-3883200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr11:3881200-3883800	Enhancers	Adipose Nuclei	Adipose
36	chr11:3881200-3883800	Enhancers	Liver	Liver
37	chr11:3881200-3884600	Weak transcription	Spleen	Spleen
38	chr11:3881200-3885200	Weak transcription	Right Ventricle	heart
39	chr11:3881200-3885600	Weak transcription	Lung	lung
40	chr11:3881200-3885800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:3881200-3886000	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr11:3881200-3886000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:3881200-3886000	Weak transcription	NHEK	skin
44	chr11:3881200-3886200	Weak transcription	NHDF-Ad	bronchial
45	chr11:3881200-3886400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:3881200-3886400	Weak transcription	HSMMtube	muscle
47	chr11:3881200-3886600	Weak transcription	Colonic Mucosa	Colon
48	chr11:3881200-3886600	Weak transcription	Placenta	Placenta
49	chr11:3881200-3886600	Weak transcription	Right Atrium	heart
50	chr11:3881200-3886600	Weak transcription	HSMM	muscle

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