Variant report

Variant	rs7104555
Chromosome Location	chr11:25898058-25898059
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1025837	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1025839	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10400312	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10400315	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029003	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11603501	0.86[ASN][1000 genomes]
rs12417352	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417638	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12417956	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12418056	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12418534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418764	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1348166	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1441494	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1441510	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs167877	0.87[EUR][1000 genomes]
rs16914877	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1837782	0.83[ASN][1000 genomes]
rs184494	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1971144	0.80[ASN][1000 genomes]
rs2349603	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4291637	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61885269	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61885271	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61888163	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7101988	0.87[EUR][1000 genomes]
rs7115893	0.84[ASN][1000 genomes]
rs7125344	0.85[ASN][1000 genomes]
rs7935268	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7947256	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041080	chr11:25585107-25931087	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1039190	chr11:25592509-25925352	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv540973	chr11:25592509-25925352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv467774	chr11:25773322-25924809	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv553895	chr11:25773322-25924809	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1039469	chr11:25853822-25918864	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1045348	chr11:25858848-25921010	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25886200-25898200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:25897200-25898400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:25897400-25898600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:25897600-25898400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:25897800-25898400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:25897800-25898400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:25897800-25898600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:25898000-25898200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:25898000-25898400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:25898000-25898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:25898000-25898600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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