Variant report

Variant	rs7104737
Chromosome Location	chr11:36315189-36315190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11033524	0.84[ASN][1000 genomes]
rs11033527	0.84[ASN][1000 genomes]
rs1562327	0.85[JPT][hapmap]
rs1900336	0.81[ASN][1000 genomes]
rs2289987	0.84[ASN][1000 genomes]
rs2305169	0.85[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs4418777	0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6484831	0.85[CHB][hapmap]
rs7107433	0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7109505	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7939948	0.85[CEU][hapmap];0.89[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7951298	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9667667	0.84[ASN][1000 genomes]
rs9787880	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9787894	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9888213	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36317400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:36311400-36322600	Weak transcription	Spleen	Spleen
3	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:36311600-36317000	Weak transcription	Hela-S3	cervix
5	chr11:36311600-36317400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:36311600-36317600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:36311600-36318400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:36311600-36318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:36311800-36317200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:36311800-36321800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:36312000-36316600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:36312200-36317800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:36312800-36315800	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:36314200-36321200	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:36314400-36316000	Weak transcription	Brain Substantia Nigra	brain
17	chr11:36314400-36316400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:36314400-36316600	Weak transcription	Brain Angular Gyrus	brain
19	chr11:36314400-36316600	Weak transcription	Brain Anterior Caudate	brain
20	chr11:36314400-36318000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:36314400-36318400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:36314400-36318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:36314400-36318600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:36314600-36316400	Weak transcription	Adipose Nuclei	Adipose

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