Variant report

Variant	rs1562327
Chromosome Location	chr11:36320992-36320993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36319061..36322401-chr11:36325495..36327520,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10836528	0.86[YRI][hapmap]
rs10836530	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10836531	0.87[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11603166	0.81[EUR][1000 genomes]
rs1562325	0.88[LWK][hapmap];0.81[EUR][1000 genomes]
rs1562326	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17814690	0.86[YRI][hapmap]
rs1900336	0.80[EUR][1000 genomes]
rs2289987	0.80[EUR][1000 genomes]
rs2422185	0.84[YRI][hapmap]
rs2901672	0.80[EUR][1000 genomes]
rs4418777	0.81[CEU][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs61878687	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484831	0.81[CEU][hapmap]
rs7104737	0.85[JPT][hapmap]
rs7107433	0.81[CEU][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs7109505	0.81[CEU][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs7951298	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs9667667	0.80[EUR][1000 genomes]
rs9787880	0.81[CEU][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs9787894	0.81[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs9888212	0.85[EUR][1000 genomes]
rs9888261	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv526434	chr11:36320195-36320992	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36322600	Weak transcription	Spleen	Spleen
2	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:36311800-36321800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:36314200-36321200	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:36318000-36321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:36318200-36322400	Weak transcription	Placenta	Placenta
8	chr11:36318800-36321800	Weak transcription	Fetal Lung	lung
9	chr11:36319000-36321000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr11:36319200-36331800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:36319400-36321000	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr11:36319400-36321600	Weak transcription	Colonic Mucosa	Colon
13	chr11:36319600-36321800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:36319600-36321800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:36319600-36322000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:36319600-36323400	Enhancers	Brain Angular Gyrus	brain
17	chr11:36319800-36321800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:36319800-36321800	Weak transcription	Small Intestine	intestine
19	chr11:36319800-36321800	Weak transcription	Hela-S3	cervix
20	chr11:36320000-36323200	Enhancers	Brain Substantia Nigra	brain
21	chr11:36320400-36321600	Weak transcription	Adipose Nuclei	Adipose
22	chr11:36320400-36322000	Enhancers	Brain Hippocampus Middle	brain
23	chr11:36320600-36322200	Weak transcription	Fetal Intestine Small	intestine
24	chr11:36320800-36321000	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:36320800-36321800	Weak transcription	Fetal Intestine Large	intestine
26	chr11:36320800-36323000	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links