Variant report

Variant	rs11603166
Chromosome Location	chr11:36308992-36308993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:36308553..36310519-chr3:28494833..28496353,2	K562	blood:
2	chr11:36303032..36306180-chr11:36307506..36310865,3	K562	blood:
3	chr11:36281244..36283748-chr11:36307476..36309302,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11033524	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11033527	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12361221	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1562327	0.81[EUR][1000 genomes]
rs1900336	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2289986	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2289987	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4418777	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61878687	0.88[EUR][1000 genomes]
rs6484831	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7107433	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109505	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7951298	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9667667	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9787880	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9787894	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9888212	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9888261	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3359911	chr11:36307601-36310149	Weak transcription Active TSS Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3375312	chr11:36307926-36309974	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3339043	chr11:36308426-36309424	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3375215	chr11:36308485-36309037	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3328916	chr11:36308526-36309004	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11603166	LINC00610	cis	Thyroid	GTEx

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36288000-36310200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:36290800-36310400	Weak transcription	Stomach Mucosa	stomach
3	chr11:36292000-36309600	Weak transcription	Psoas Muscle	Psoas
4	chr11:36292200-36309600	Weak transcription	A549	lung
5	chr11:36295000-36310000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:36296400-36309800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:36296600-36309600	Weak transcription	Fetal Lung	lung
8	chr11:36296600-36309600	Weak transcription	NHLF	lung
9	chr11:36298200-36310000	Weak transcription	NHDF-Ad	bronchial
10	chr11:36298400-36309400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:36300600-36309600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:36300600-36309600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:36300600-36309600	Weak transcription	Right Ventricle	heart
14	chr11:36300800-36309200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:36300800-36309600	Weak transcription	Pancreas	Pancrea
16	chr11:36300800-36309600	Weak transcription	Spleen	Spleen
17	chr11:36300800-36310000	Weak transcription	Colonic Mucosa	Colon
18	chr11:36300800-36310000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:36300800-36310000	Weak transcription	Gastric	stomach
20	chr11:36301000-36309200	Weak transcription	Dnd41	blood
21	chr11:36301000-36309400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:36301000-36309600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:36301000-36309800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:36301000-36309800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:36301200-36309400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:36301200-36309400	Weak transcription	HepG2	liver
27	chr11:36301200-36309600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:36301200-36309800	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:36301200-36310200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:36301400-36309200	Weak transcription	Brain Angular Gyrus	brain
31	chr11:36301400-36309400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:36301400-36309600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:36301600-36310000	Weak transcription	Placenta	Placenta
34	chr11:36301800-36309200	Weak transcription	Fetal Brain Female	brain
35	chr11:36301800-36309600	Weak transcription	Left Ventricle	heart
36	chr11:36301800-36310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:36302000-36309200	Weak transcription	Liver	Liver
38	chr11:36302000-36310000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:36302000-36310000	Weak transcription	Thymus	Thymus
40	chr11:36302200-36309400	Weak transcription	HUVEC	blood vessel
41	chr11:36302200-36309600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:36302200-36309600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:36302200-36310000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:36302400-36309400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:36302400-36309400	Weak transcription	Adipose Nuclei	Adipose
46	chr11:36302400-36309600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr11:36302400-36309600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:36302400-36309600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:36302400-36310000	Weak transcription	Fetal Muscle Leg	muscle
50	chr11:36302400-36310200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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