Variant report

Variant	rs61878687
Chromosome Location	chr11:36317269-36317270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:36317254-36317304	HIPEpiC	eye:	n/a
2	chr11:36317254-36317304	AG04449	skin:	fetal
3	chr11:36317254-36317304	Hela-S3	cervix:	n/a
4	chr11:36317254-36317304	HRPEpiC	eye:	n/a
5	chr11:36317254-36317304	AoSMC	blood vessel:	n/a
6	chr11:36317254-36317304	Hepatocyte	liver:	n/a
7	chr11:36317254-36317304	HAEpiC	amniotic membrane:	n/a
8	chr11:36317254-36317304	Caco-2	colon:	n/a
9	chr11:36317254-36317304	ECC-1	luminal epithelium:	n/a
10	chr11:36317254-36317304	BE2_C	brain:	n/a
11	chr11:36317254-36317304	PANC-1	pancreas:	n/a
12	chr11:36317254-36317304	GM19239	blood:	n/a
13	chr11:36317254-36317304	MCF-7	breast:	n/a
14	chr11:36317254-36317304	BJ	skin:	n/a
15	chr11:36317254-36317304	HL-60	blood:	n/a
16	chr11:36317254-36317304	HCPEpiC	choroid plexus:	n/a
17	chr11:36317254-36317304	PrEC	prostate:	n/a
18	chr11:36317254-36317304	T-47D	breast:	n/a
19	chr11:36317254-36317304	PFSK-1	brain:	n/a
20	chr11:36317254-36317304	GM06990	blood:	n/a
21	chr11:36317254-36317304	A549	lung:	n/a
22	chr11:36317254-36317304	AG09319	gingival:	n/a
23	chr11:36317254-36317304	GM12891	blood:	n/a
24	chr11:36317254-36317304	Jurkat	blood:	n/a
25	chr11:36317254-36317304	H1-hESC	embryonic stem cell:	embryo
26	chr11:36317254-36317304	HNPCEpiC	eye:	n/a
27	chr11:36317254-36317304	NT2-D1	testis:	n/a
28	chr11:36317254-36317304	SK-N-SH_RA	brain:	n/a
29	chr11:36317254-36317304	GM12878	blood:	n/a
30	chr11:36317254-36317304	HepG2	liver:	n/a
31	chr11:36317254-36317304	ProgFib	skin:	n/a
32	chr11:36317254-36317304	CMK	blood:	n/a
33	chr11:36317254-36317304	HPAEpiC	pulmonary alveolar:	n/a
34	chr11:36317254-36317304	IMR90	lung:	fetal
35	chr11:36317254-36317304	MCF10A-Er-Src	breast:	n/a
36	chr11:36317254-36317304	HCM	heart:	n/a
37	chr11:36317254-36317304	NHDF-neo	bronchial:	n/a
38	chr11:36317254-36317304	NH-A	brain:	n/a
39	chr11:36317254-36317304	GM12892	blood:	n/a
40	chr11:36317254-36317304	LNCaP	prostate:	n/a
41	chr11:36317254-36317304	K562	blood:	n/a
42	chr11:36317254-36317304	HMEC	breast:	n/a
43	chr11:36317254-36317304	HEK293	kidney:	embryo
44	chr11:36317254-36317304	AG09309	skin:	n/a
45	chr11:36317254-36317304	NHBE	bronchial:	n/a
46	chr11:36317254-36317304	HRCEpiC	kidney:	n/a
47	chr11:36317254-36317304	SK-N-SH	brain:	n/a
48	chr11:36317254-36317304	HRE	kidney:	n/a
49	chr11:36317254-36317304	SAEC	small airway:	n/a
50	chr11:36317254-36317304	HEEpiC	esophagus:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36315435..36317774-chr11:36321037..36322762,2	K562	blood:

No data

Variant related genes	Relation type
PRR5L	CpG island
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10836528	0.80[EUR][1000 genomes]
rs11033524	0.86[EUR][1000 genomes]
rs11033527	0.86[EUR][1000 genomes]
rs11033538	0.80[EUR][1000 genomes]
rs11603166	0.88[EUR][1000 genomes]
rs1562327	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17814690	0.80[EUR][1000 genomes]
rs1900336	0.87[EUR][1000 genomes]
rs2289986	0.84[EUR][1000 genomes]
rs2289987	0.87[EUR][1000 genomes]
rs4418777	0.87[EUR][1000 genomes]
rs6484831	0.86[EUR][1000 genomes]
rs7107433	0.87[EUR][1000 genomes]
rs7109505	0.87[EUR][1000 genomes]
rs7951298	0.86[EUR][1000 genomes]
rs9667667	0.87[EUR][1000 genomes]
rs9787880	0.92[EUR][1000 genomes]
rs9787894	0.92[EUR][1000 genomes]
rs9888212	0.92[EUR][1000 genomes]
rs9888261	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61878687	LINC00610	cis	Thyroid	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36317400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:36311400-36322600	Weak transcription	Spleen	Spleen
3	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:36311600-36317400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:36311600-36317600	Weak transcription	Fetal Intestine Large	intestine
6	chr11:36311600-36318400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:36311600-36318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:36311800-36321800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:36312200-36317800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:36314200-36321200	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:36314400-36318000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:36314400-36318400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:36314400-36318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:36314400-36318600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:36315800-36317600	Enhancers	Brain Hippocampus Middle	brain
17	chr11:36316000-36317600	Enhancers	Brain Substantia Nigra	brain
18	chr11:36316400-36320400	Enhancers	Adipose Nuclei	Adipose
19	chr11:36316600-36317400	Enhancers	Brain Anterior Caudate	brain
20	chr11:36316600-36317400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr11:36316600-36317600	Enhancers	Brain Angular Gyrus	brain
22	chr11:36316800-36319000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:36317000-36318400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:36317000-36318400	Enhancers	Hela-S3	cervix
25	chr11:36317200-36317600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:36317200-36317600	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr11:36317200-36318000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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