Variant report

Variant	rs7109860
Chromosome Location	chr11:93267930-93267931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:93267900-93268050	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000234106	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11601368	0.81[AMR][1000 genomes]
rs3793995	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93255000-93274600	Weak transcription	Hela-S3	cervix
2	chr11:93258400-93274800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:93262400-93269600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:93262400-93271000	Weak transcription	Aorta	Aorta
5	chr11:93263000-93270600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:93263200-93269400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:93263200-93275200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:93263400-93268600	Weak transcription	HUVEC	blood vessel
9	chr11:93263400-93269200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:93263400-93269600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:93263400-93269600	Enhancers	Liver	Liver
12	chr11:93263600-93268400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:93263600-93268600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:93263600-93268800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:93263600-93268800	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:93263600-93269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:93263600-93270000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:93263600-93270200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:93263600-93271200	Weak transcription	Esophagus	oesophagus
20	chr11:93263800-93269400	Weak transcription	Fetal Lung	lung
21	chr11:93263800-93269600	Weak transcription	Brain Angular Gyrus	brain
22	chr11:93263800-93270200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:93263800-93270800	Weak transcription	K562	blood
24	chr11:93264000-93268000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:93264000-93268000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:93264000-93268400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:93264000-93269200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:93264000-93269400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:93264000-93269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:93264000-93270000	Weak transcription	Osteobl	bone
31	chr11:93264000-93270200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:93264000-93270200	Weak transcription	Colonic Mucosa	Colon
33	chr11:93264000-93270200	Weak transcription	Spleen	Spleen
34	chr11:93264000-93270400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:93264000-93270800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:93264000-93271600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:93264000-93275000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:93264000-93275000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:93264000-93275200	Weak transcription	HSMMtube	muscle
40	chr11:93264200-93268200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:93264200-93268400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:93264200-93269400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:93264200-93270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:93264200-93273200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:93264200-93275000	Weak transcription	Fetal Intestine Large	intestine
46	chr11:93264400-93268200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:93264400-93269400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:93264600-93268000	Weak transcription	Pancreas	Pancrea
49	chr11:93264600-93268400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr11:93264600-93269200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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