Variant report

Variant	rs11601368
Chromosome Location	chr11:93269472-93269473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10765615	1.00[ASN][1000 genomes]
rs3793995	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109860	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93255000-93274600	Weak transcription	Hela-S3	cervix
2	chr11:93258400-93274800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:93262400-93269600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:93262400-93271000	Weak transcription	Aorta	Aorta
5	chr11:93263000-93270600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:93263200-93275200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:93263400-93269600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:93263400-93269600	Enhancers	Liver	Liver
9	chr11:93263600-93269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:93263600-93270000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:93263600-93270200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:93263600-93271200	Weak transcription	Esophagus	oesophagus
13	chr11:93263800-93269600	Weak transcription	Brain Angular Gyrus	brain
14	chr11:93263800-93270200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:93263800-93270800	Weak transcription	K562	blood
16	chr11:93264000-93269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:93264000-93270000	Weak transcription	Osteobl	bone
18	chr11:93264000-93270200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:93264000-93270200	Weak transcription	Colonic Mucosa	Colon
20	chr11:93264000-93270200	Weak transcription	Spleen	Spleen
21	chr11:93264000-93270400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:93264000-93270800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:93264000-93271600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:93264000-93275000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:93264000-93275000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:93264000-93275200	Weak transcription	HSMMtube	muscle
27	chr11:93264200-93270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:93264200-93273200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:93264200-93275000	Weak transcription	Fetal Intestine Large	intestine
30	chr11:93264600-93270400	Weak transcription	Stomach Mucosa	stomach
31	chr11:93264800-93270400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:93264800-93275000	Weak transcription	Thymus	Thymus
33	chr11:93265400-93269600	Weak transcription	HepG2	liver
34	chr11:93265400-93275000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:93265800-93269600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:93265800-93274600	Weak transcription	Dnd41	blood
37	chr11:93266000-93274600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:93266000-93275000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:93266600-93269600	Weak transcription	Fetal Brain Female	brain
40	chr11:93266600-93269600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:93266600-93270000	Weak transcription	Adipose Nuclei	Adipose
42	chr11:93266600-93271200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:93266800-93270000	Weak transcription	Psoas Muscle	Psoas
44	chr11:93267800-93271800	Enhancers	Fetal Brain Male	brain
45	chr11:93268200-93270000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:93268200-93270000	Weak transcription	Fetal Muscle Leg	muscle
47	chr11:93268200-93270600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:93268200-93271200	Weak transcription	Placenta	Placenta
49	chr11:93268400-93270200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:93268400-93271800	Enhancers	Primary hematopoietic stem cells	blood

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