Variant report
| Variant | rs7110477 |
|---|---|
| Chromosome Location | chr11:45350810-45350811 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PRDM11-8 | chr11:45349524-45350967 | ucscGeneNc_uc001myr_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs56149423 | 1.00[AMR][1000 genomes] |
| rs56222915 | 1.00[AMR][1000 genomes] |
| rs56245349 | 1.00[AMR][1000 genomes] |
| rs57272528 | 1.00[AMR][1000 genomes] |
| rs57619564 | 1.00[AMR][1000 genomes] |
| rs59172361 | 1.00[AMR][1000 genomes] |
| rs59913855 | 1.00[AMR][1000 genomes] |
| rs60624442 | 1.00[AMR][1000 genomes] |
| rs60924591 | 1.00[AMR][1000 genomes] |
| rs7111829 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530619 | chr11:45294176-45553928 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv975839 | chr11:45346121-45350850 | Enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
