Variant report

Variant	rs7110874
Chromosome Location	chr11:119564842-119564843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119563899..119565883-chr11:119570340..119572500,2	MCF-7	breast:
2	chr11:119563935..119565490-chr11:119599078..119601378,2	MCF-7	breast:
3	chr11:119564818..119565650-chr11:119598208..119598847,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110400	Chromatin interaction
ENSG00000254854	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10790330	0.91[JPT][hapmap]
rs10790331	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10790332	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs10790335	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10892433	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10892434	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1110166	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11217414	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11217415	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11825206	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467051	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1533051	0.85[EUR][1000 genomes]
rs2006949	0.84[EUR][1000 genomes]
rs2015078	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2292293	0.88[CEU][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3902806	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3935405	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3935406	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4623916	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4936492	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4936493	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4936494	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4936495	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4938708	0.92[CEU][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4938709	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4938710	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4938711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589769	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7111290	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7122134	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs7124934	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs715849	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7924573	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7932832	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7933848	0.92[CEU][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7945395	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7945424	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7950059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885429	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs885430	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs906830	0.88[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv468880	chr11:119564496-119588062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv556471	chr11:119564496-119588062	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119550200-119567400	Enhancers	Esophagus	oesophagus
2	chr11:119551600-119567400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:119553800-119565200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:119554600-119566400	Enhancers	Fetal Muscle Leg	muscle
5	chr11:119555800-119568800	Weak transcription	Left Ventricle	heart
6	chr11:119556000-119568600	Weak transcription	Right Atrium	heart
7	chr11:119556000-119571600	Weak transcription	NHLF	lung
8	chr11:119556600-119565200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:119559000-119567200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:119559400-119566200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:119559800-119570200	Enhancers	Fetal Thymus	thymus
12	chr11:119560400-119566400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:119560400-119567800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:119560400-119569600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:119561000-119565600	Enhancers	Thymus	Thymus
16	chr11:119561000-119580600	Weak transcription	Fetal Kidney	kidney
17	chr11:119561200-119567800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:119561400-119565400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:119561400-119565400	Enhancers	Brain Germinal Matrix	brain
20	chr11:119561400-119566400	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:119561400-119568800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:119561600-119565600	Enhancers	GM12878-XiMat	blood
23	chr11:119561800-119565200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:119561800-119565200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:119561800-119566400	Enhancers	Brain Angular Gyrus	brain
26	chr11:119561800-119566400	Enhancers	Brain Cingulate Gyrus	brain
27	chr11:119561800-119568400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:119561800-119568800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:119561800-119577600	Enhancers	Brain Hippocampus Middle	brain
30	chr11:119562000-119565400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:119562000-119565800	Enhancers	Brain Anterior Caudate	brain
32	chr11:119562000-119566400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:119562000-119568600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr11:119562000-119578400	Enhancers	Duodenum Mucosa	Duodenum
35	chr11:119562200-119565200	Weak transcription	Primary B cells from cord blood	blood
36	chr11:119562200-119566600	Enhancers	Brain Substantia Nigra	brain
37	chr11:119562400-119565200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr11:119562400-119571000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:119562400-119571000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:119562600-119565800	Enhancers	Pancreas	Pancrea
41	chr11:119563000-119567400	Weak transcription	Right Ventricle	heart
42	chr11:119563000-119568600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:119563200-119567000	Enhancers	HMEC	breast
44	chr11:119563200-119578400	Genic enhancers	Fetal Intestine Small	intestine
45	chr11:119563400-119565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr11:119563400-119566800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:119563400-119568400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr11:119563600-119565600	Enhancers	NHEK	skin
49	chr11:119563600-119574000	Enhancers	Placenta	Placenta
50	chr11:119563800-119565800	Enhancers	Small Intestine	intestine

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