Variant report

Variant	rs885429
Chromosome Location	chr11:119572571-119572572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119567595..119569306-chr11:119571218..119572844,2	MCF-7	breast:
2	chr11:119568263..119570489-chr11:119571275..119572812,2	K562	blood:
3	chr11:119571255..119574750-chr11:119575063..119576895,3	MCF-7	breast:
4	chr11:119554561..119556794-chr11:119570560..119572885,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10790331	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10790332	0.82[AMR][1000 genomes]
rs10790335	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892433	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10892434	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1110166	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11217414	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217415	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11825206	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1467051	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1533051	0.81[AMR][1000 genomes]
rs2006949	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2015078	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2292293	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3902806	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935405	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3935406	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4623916	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4936492	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4936493	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4936494	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4936495	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4938708	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4938709	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4938710	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4938711	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6589769	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110874	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7111290	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs715849	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7924573	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7932832	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7933848	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7945395	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7945424	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7950059	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs885430	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs906830	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv468880	chr11:119564496-119588062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv556471	chr11:119564496-119588062	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119561000-119580600	Weak transcription	Fetal Kidney	kidney
2	chr11:119561800-119577600	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119562000-119578400	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:119563200-119578400	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:119563600-119574000	Enhancers	Placenta	Placenta
6	chr11:119564200-119578400	Enhancers	Fetal Intestine Large	intestine
7	chr11:119565200-119582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:119567200-119573200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:119567200-119573600	Enhancers	Small Intestine	intestine
10	chr11:119567400-119573400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:119567400-119574400	Enhancers	Fetal Muscle Leg	muscle
12	chr11:119567400-119575000	Enhancers	Fetal Muscle Trunk	muscle
13	chr11:119567400-119576600	Weak transcription	Fetal Heart	heart
14	chr11:119567400-119579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:119567600-119572600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:119567800-119572600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:119567800-119572600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:119568000-119580600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:119568200-119573600	Enhancers	Adipose Nuclei	Adipose
20	chr11:119568400-119573800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:119568400-119575600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:119568400-119580600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:119568400-119587000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr11:119568600-119572800	Enhancers	Right Ventricle	heart
25	chr11:119568600-119574200	Enhancers	Esophagus	oesophagus
26	chr11:119568600-119574600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:119568600-119580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:119568600-119580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:119568600-119590400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:119568800-119574200	Enhancers	HMEC	breast
31	chr11:119568800-119576800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:119569200-119573600	Genic enhancers	NHEK	skin
33	chr11:119569600-119574400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:119569800-119572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:119569800-119574200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:119569800-119575000	Enhancers	Pancreas	Pancrea
37	chr11:119570000-119576200	Weak transcription	Fetal Stomach	stomach
38	chr11:119570000-119579200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:119570600-119573000	Enhancers	HepG2	liver
40	chr11:119570600-119573800	Weak transcription	Spleen	Spleen
41	chr11:119570600-119574000	Weak transcription	Gastric	stomach
42	chr11:119570800-119572600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:119570800-119572600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:119570800-119574800	Enhancers	Brain Cingulate Gyrus	brain
45	chr11:119571000-119572600	Weak transcription	Brain Anterior Caudate	brain
46	chr11:119571000-119574800	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr11:119571200-119572600	Weak transcription	Brain Angular Gyrus	brain
48	chr11:119571200-119573200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr11:119571600-119572800	Weak transcription	Brain Substantia Nigra	brain
50	chr11:119571600-119573200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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