Variant report

Variant	rs7113314
Chromosome Location	chr11:9646040-9646041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10743113	1.00[EUR][1000 genomes]
rs10770049	0.98[EUR][1000 genomes]
rs4243949	1.00[EUR][1000 genomes]
rs7104787	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111053	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123629	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9635400-9646400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:9636400-9647400	Weak transcription	Right Atrium	heart
3	chr11:9637000-9646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:9638200-9646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:9638600-9646600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:9639800-9648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:9640000-9646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:9641600-9647800	Weak transcription	HSMMtube	muscle
9	chr11:9642000-9646800	Weak transcription	GM12878-XiMat	blood
10	chr11:9645000-9646200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:9645600-9647600	Enhancers	Spleen	Spleen
12	chr11:9645600-9648000	Enhancers	HUVEC	blood vessel
13	chr11:9645600-9648600	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:9645800-9647400	Weak transcription	K562	blood
15	chr11:9645800-9648600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:9646000-9647200	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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