Variant report

Variant	rs7123629
Chromosome Location	chr11:9678767-9678768
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10743113	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10770049	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10770050	0.92[ASN][1000 genomes]
rs10770051	0.97[ASN][1000 genomes]
rs10840277	0.92[ASN][1000 genomes]
rs1865557	0.80[ASN][1000 genomes]
rs2099465	1.00[CHB][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs4243949	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4243950	0.93[ASN][1000 genomes]
rs7104787	0.98[EUR][1000 genomes]
rs7111053	0.98[EUR][1000 genomes]
rs7113314	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv972945	chr11:9660423-9684250	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv971987	chr11:9674511-9684250	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9674000-9684000	Weak transcription	HSMMtube	muscle
2	chr11:9674000-9684800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:9674200-9679000	Weak transcription	Aorta	Aorta
4	chr11:9674200-9684800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:9678400-9682200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:9678400-9684000	Weak transcription	Placenta	Placenta
7	chr11:9678400-9684200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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