Variant report

Variant	rs4243950
Chromosome Location	chr11:9666472-9666473
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10770049	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10770050	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10770051	0.95[ASN][1000 genomes]
rs10840277	0.99[ASN][1000 genomes]
rs1865557	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2099465	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7112156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7123629	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv972945	chr11:9660423-9684250	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9660600-9670400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:9661600-9667600	Weak transcription	Spleen	Spleen
3	chr11:9661800-9667200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:9664200-9666600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:9664400-9667800	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:9665200-9668400	Enhancers	Fetal Intestine Small	intestine
7	chr11:9666200-9667800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:9666400-9667200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:9666400-9667600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:9666400-9667600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:9666400-9667600	Weak transcription	Fetal Intestine Large	intestine
12	chr11:9666400-9667600	Weak transcription	Pancreas	Pancrea
13	chr11:9666400-9669400	Weak transcription	Lung	lung
14	chr11:9666400-9670000	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links