Variant report

Variant	rs1865557
Chromosome Location	chr11:9650624-9650625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10770049	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10770050	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10770051	0.82[ASN][1000 genomes]
rs10840277	0.86[ASN][1000 genomes]
rs2099465	0.93[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4243949	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4243950	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7112156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7123629	0.93[CHB][hapmap];0.88[YRI][hapmap];0.80[ASN][1000 genomes]
rs7930489	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9647600-9652400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:9647800-9652200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:9647800-9654800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:9648800-9650800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:9649800-9651000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:9650200-9651000	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:9650400-9651000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:9650400-9651000	Enhancers	Spleen	Spleen
9	chr11:9650600-9651000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:9650600-9651000	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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