Variant report

Variant	rs7113747
Chromosome Location	chr11:75864977-75864978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75864698..75867155-chr11:75871013..75872936,2	MCF-7	breast:
2	chr11:75864249..75865220-chr11:76029478..76030050,2	MCF-7	breast:
3	chr11:75864528..75867031-chr11:75871798..75873454,2	K562	blood:
4	chr11:75679377..75681059-chr11:75863070..75865584,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11825311	1.00[CEU][hapmap]
rs57208533	0.82[ASN][1000 genomes]
rs6592626	1.00[CEU][hapmap]
rs6592627	1.00[CEU][hapmap]
rs7117041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120552	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7127326	1.00[CEU][hapmap]
rs7933454	1.00[CEU][hapmap]
rs7937889	1.00[CEU][hapmap]
rs7946059	1.00[CEU][hapmap]
rs7946566	1.00[CEU][hapmap]
rs7946784	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1051472	chr11:75851880-75922608	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1037940	chr11:75855316-75909619	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75833400-75872800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:75862800-75865000	Enhancers	Pancreas	Pancrea
3	chr11:75862800-75869200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:75863000-75865000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:75863000-75865000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr11:75863000-75865200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:75863200-75865000	Enhancers	Spleen	Spleen
8	chr11:75863200-75865000	Flanking Active TSS	HepG2	liver
9	chr11:75863600-75865000	Enhancers	Placenta	Placenta
10	chr11:75863600-75865200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:75863800-75865000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:75863800-75865000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:75863800-75865000	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:75863800-75865000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:75863800-75865000	Enhancers	Colonic Mucosa	Colon
16	chr11:75863800-75865000	Enhancers	Fetal Lung	lung
17	chr11:75863800-75865000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr11:75863800-75865000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:75863800-75865000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:75863800-75865000	Enhancers	HMEC	breast
21	chr11:75863800-75865000	Enhancers	NHEK	skin
22	chr11:75863800-75865200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr11:75863800-75865200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:75863800-75865200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:75863800-75865200	Enhancers	NHDF-Ad	bronchial
26	chr11:75863800-75865400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:75863800-75865800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:75863800-75865800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:75864000-75865000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
30	chr11:75864000-75865000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr11:75864000-75865000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:75864000-75865000	Enhancers	Fetal Intestine Small	intestine
33	chr11:75864000-75865000	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr11:75864000-75865800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:75864000-75865800	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr11:75864000-75865800	Enhancers	Adipose Nuclei	Adipose
37	chr11:75864000-75868000	Weak transcription	Fetal Heart	heart
38	chr11:75864200-75865000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
39	chr11:75864400-75865000	Enhancers	Brain Hippocampus Middle	brain
40	chr11:75864400-75865200	Enhancers	Brain Anterior Caudate	brain
41	chr11:75864400-75865200	Enhancers	Brain Substantia Nigra	brain
42	chr11:75864400-75865200	Enhancers	GM12878-XiMat	blood
43	chr11:75864400-75865600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr11:75864400-75868000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:75864400-75871800	Weak transcription	Right Atrium	heart
46	chr11:75864600-75865000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:75864600-75865000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:75864600-75865000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:75864600-75872600	Weak transcription	Fetal Intestine Large	intestine
50	chr11:75864800-75865000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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