Variant report

Variant	rs11825311
Chromosome Location	chr11:75841399-75841400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75841396..75843051-chr11:75844973..75846775,2	K562	blood:
2	chr11:75840057..75843029-chr11:75846678..75850305,4	MCF-7	breast:
3	chr11:75840494..75842452-chr11:75842654..75844763,2	K562	blood:

Variant related genes	Relation type
ENSG00000255421	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11820084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822333	0.87[EUR][1000 genomes]
rs11828568	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs1521529	0.87[EUR][1000 genomes]
rs1521530	0.87[EUR][1000 genomes]
rs17134532	0.87[EUR][1000 genomes]
rs17134568	0.87[EUR][1000 genomes]
rs17134571	0.87[EUR][1000 genomes]
rs17134573	0.87[EUR][1000 genomes]
rs17134575	0.87[EUR][1000 genomes]
rs17134576	0.87[EUR][1000 genomes]
rs17134579	0.87[EUR][1000 genomes]
rs17134594	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099856	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs2139934	0.87[EUR][1000 genomes]
rs35688819	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272311	0.87[EUR][1000 genomes]
rs56803972	0.87[EUR][1000 genomes]
rs57092805	0.87[EUR][1000 genomes]
rs57211393	0.87[EUR][1000 genomes]
rs57307347	0.87[EUR][1000 genomes]
rs59789333	0.80[EUR][1000 genomes]
rs6592624	0.87[EUR][1000 genomes]
rs6592625	0.87[EUR][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7103027	0.87[EUR][1000 genomes]
rs7103473	0.87[EUR][1000 genomes]
rs7104995	0.87[EUR][1000 genomes]
rs7107640	0.87[EUR][1000 genomes]
rs7108353	0.87[EUR][1000 genomes]
rs7109579	0.87[EUR][1000 genomes]
rs7114160	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7114434	0.87[EUR][1000 genomes]
rs7115657	1.00[CHD][hapmap];0.82[GIH][hapmap]
rs7121876	0.87[EUR][1000 genomes]
rs7127326	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7129228	0.87[EUR][1000 genomes]
rs73496192	0.87[EUR][1000 genomes]
rs73498213	0.87[EUR][1000 genomes]
rs73498295	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7928611	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928973	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929964	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930216	0.87[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7935047	0.87[EUR][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7942870	0.87[EUR][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946584	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952260	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:75825400-75841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
8	chr11:75827200-75851800	Weak transcription	Gastric	stomach
9	chr11:75827400-75851800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:75827400-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:75827600-75851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:75827600-75851800	Weak transcription	Dnd41	blood
13	chr11:75827800-75842200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:75827800-75849400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:75827800-75851400	Weak transcription	HepG2	liver
16	chr11:75828000-75842200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:75828200-75841800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:75830800-75841800	Weak transcription	Primary T cells from cord blood	blood
19	chr11:75831200-75841800	Weak transcription	Aorta	Aorta
20	chr11:75831400-75851800	Weak transcription	Fetal Thymus	thymus
21	chr11:75831600-75843800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:75831800-75845200	Weak transcription	Liver	Liver
23	chr11:75831800-75851600	Weak transcription	Spleen	Spleen
24	chr11:75832000-75861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:75832400-75841600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:75832400-75842200	Weak transcription	Fetal Intestine Small	intestine
27	chr11:75832400-75852000	Weak transcription	Fetal Intestine Large	intestine
28	chr11:75832600-75843000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:75832600-75844400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:75832600-75846200	Weak transcription	HUVEC	blood vessel
31	chr11:75832600-75857600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr11:75832800-75841600	Weak transcription	Small Intestine	intestine
33	chr11:75832800-75841800	Weak transcription	Psoas Muscle	Psoas
34	chr11:75832800-75841800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:75832800-75851200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:75832800-75851400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:75832800-75851800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:75832800-75859400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:75833000-75842200	Weak transcription	Right Ventricle	heart
40	chr11:75833000-75842200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:75833000-75845800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:75833000-75846400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:75833000-75851600	Weak transcription	Lung	lung
44	chr11:75833000-75854400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:75833000-75862800	Weak transcription	K562	blood
46	chr11:75833400-75855000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:75833400-75872800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:75834400-75846600	Weak transcription	Thymus	Thymus
49	chr11:75834400-75862800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:75834600-75851400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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