Variant report

Variant	rs17134568
Chromosome Location	chr11:75832480-75832481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75817536..75821071-chr11:75829941..75832993,4	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11820084	0.87[EUR][1000 genomes]
rs11821272	0.91[EUR][1000 genomes]
rs11822333	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825311	0.87[EUR][1000 genomes]
rs11825529	0.87[EUR][1000 genomes]
rs11826581	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	1.00[ASN][1000 genomes]
rs1470235	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1521530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134493	0.91[EUR][1000 genomes]
rs17134497	0.91[EUR][1000 genomes]
rs17134510	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	1.00[EUR][1000 genomes]
rs17134571	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134594	0.83[EUR][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2139934	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	0.91[EUR][1000 genomes]
rs35688819	0.80[EUR][1000 genomes]
rs56117351	0.91[EUR][1000 genomes]
rs56154425	0.91[EUR][1000 genomes]
rs56272311	1.00[EUR][1000 genomes]
rs56803972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57211393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57372160	0.91[EUR][1000 genomes]
rs57603155	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58402577	0.91[EUR][1000 genomes]
rs58550963	0.87[EUR][1000 genomes]
rs58719494	1.00[ASN][1000 genomes]
rs59786011	0.91[EUR][1000 genomes]
rs59789333	0.92[EUR][1000 genomes]
rs60175455	1.00[ASN][1000 genomes]
rs60864005	0.91[EUR][1000 genomes]
rs61422358	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	0.91[EUR][1000 genomes]
rs6592619	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592620	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	1.00[EUR][1000 genomes]
rs6592625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592626	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592627	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102363	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	0.91[EUR][1000 genomes]
rs7103027	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103307	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107640	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	1.00[EUR][1000 genomes]
rs7109579	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	0.91[EUR][1000 genomes]
rs7110886	0.91[EUR][1000 genomes]
rs7111495	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114434	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115333	0.91[EUR][1000 genomes]
rs7115733	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121323	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123752	0.91[EUR][1000 genomes]
rs7127326	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129433	0.87[EUR][1000 genomes]
rs7131447	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493967	0.83[EUR][1000 genomes]
rs73493979	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	0.91[EUR][1000 genomes]
rs73496136	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	0.91[EUR][1000 genomes]
rs73496192	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73498302	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928611	0.87[EUR][1000 genomes]
rs7929964	0.87[EUR][1000 genomes]
rs7930216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933383	0.91[EUR][1000 genomes]
rs7933454	1.00[EUR][1000 genomes]
rs7935047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937889	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7941335	0.91[EUR][1000 genomes]
rs7942870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	0.91[EUR][1000 genomes]
rs7944561	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946059	0.87[EUR][1000 genomes]
rs7947864	0.91[EUR][1000 genomes]
rs7948123	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	0.91[EUR][1000 genomes]
rs7952260	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75802800-75834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:75820800-75836000	Weak transcription	NHDF-Ad	bronchial
4	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:75825400-75832800	Weak transcription	Thymus	Thymus
7	chr11:75825400-75841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:75825600-75836800	Weak transcription	HSMMtube	muscle
9	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
12	chr11:75826800-75840200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:75827200-75851800	Weak transcription	Gastric	stomach
14	chr11:75827400-75851800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:75827400-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:75827600-75834200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:75827600-75841000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:75827600-75851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:75827600-75851800	Weak transcription	Dnd41	blood
20	chr11:75827800-75842200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:75827800-75849400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:75827800-75851400	Weak transcription	HepG2	liver
23	chr11:75828000-75832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:75828000-75834000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:75828000-75842200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:75828200-75841800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:75829000-75832600	Weak transcription	K562	blood
28	chr11:75830000-75834000	Enhancers	Brain Hippocampus Middle	brain
29	chr11:75830200-75832800	Enhancers	Psoas Muscle	Psoas
30	chr11:75830200-75832800	Enhancers	Small Intestine	intestine
31	chr11:75830200-75833000	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr11:75830200-75833200	Enhancers	Fetal Muscle Leg	muscle
33	chr11:75830200-75833200	Enhancers	Left Ventricle	heart
34	chr11:75830200-75833200	Enhancers	Right Atrium	heart
35	chr11:75830200-75833400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:75830200-75834600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr11:75830400-75833000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:75830400-75833200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:75830400-75833200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr11:75830400-75833400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr11:75830400-75833400	Enhancers	Placenta	Placenta
42	chr11:75830600-75832600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr11:75830600-75832600	Enhancers	H9 Cell Line	embryonic stem cell
44	chr11:75830600-75832600	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr11:75830600-75832800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:75830600-75832800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:75830600-75832800	Enhancers	Brain Substantia Nigra	brain
48	chr11:75830600-75833000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:75830600-75833200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr11:75830600-75833200	Enhancers	Brain Cingulate Gyrus	brain

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