Variant report

Variant	rs7942891
Chromosome Location	chr11:75723130-75723131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75705246..75709045-chr11:75721805..75725477,3	MCF-7	breast:
2	chr11:75721591..75723441-chr11:75726298..75728492,2	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs11821272	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822333	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11825311	1.00[CEU][hapmap]
rs11825529	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827501	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1380075	1.00[ASN][1000 genomes]
rs1470235	1.00[EUR][1000 genomes]
rs1521529	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1521530	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17134493	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134497	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134532	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17134568	0.91[EUR][1000 genomes]
rs17134571	0.91[EUR][1000 genomes]
rs17134573	0.91[EUR][1000 genomes]
rs17134575	0.91[EUR][1000 genomes]
rs17134576	0.91[EUR][1000 genomes]
rs17134579	0.91[EUR][1000 genomes]
rs2139934	0.91[EUR][1000 genomes]
rs2165673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56071239	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56117351	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154425	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272311	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56803972	0.91[EUR][1000 genomes]
rs57092805	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57211393	0.91[EUR][1000 genomes]
rs57307347	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57372160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57603155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57723633	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58402577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550963	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58719494	0.82[EUR][1000 genomes]
rs59131065	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59786011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59789333	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60864005	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61422358	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61624710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592618	0.81[AFR][1000 genomes]
rs6592619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592620	1.00[EUR][1000 genomes]
rs6592621	0.81[AFR][1000 genomes]
rs6592624	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592625	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7102363	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102772	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103027	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7103307	1.00[EUR][1000 genomes]
rs7103473	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7104995	0.91[EUR][1000 genomes]
rs7106336	1.00[EUR][1000 genomes]
rs7107438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107458	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7107640	0.91[EUR][1000 genomes]
rs7107716	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7108353	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109579	0.91[EUR][1000 genomes]
rs7110016	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110886	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111495	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113130	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113414	1.00[EUR][1000 genomes]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115657	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7115733	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7121323	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121876	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7123752	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127326	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7127603	1.00[EUR][1000 genomes]
rs7129228	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7129433	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131447	1.00[EUR][1000 genomes]
rs72999583	0.81[AFR][1000 genomes]
rs73493967	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493979	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73493995	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496136	1.00[EUR][1000 genomes]
rs73496149	1.00[EUR][1000 genomes]
rs73496171	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496192	0.91[EUR][1000 genomes]
rs73498213	0.91[EUR][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes]
rs7927853	1.00[ASN][1000 genomes]
rs7930216	0.91[EUR][1000 genomes]
rs7933383	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7937633	1.00[ASN][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7941335	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942870	0.91[EUR][1000 genomes]
rs7944561	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7946059	1.00[CEU][hapmap]
rs7946566	1.00[CEU][hapmap]
rs7947864	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]
rs9736854	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv975380	chr11:75721675-75728222	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75693000-75728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:75693000-75730000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:75695600-75728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:75701800-75726200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:75708800-75727800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
7	chr11:75711600-75743600	Weak transcription	Pancreas	Pancrea
8	chr11:75712600-75725800	Strong transcription	GM12878-XiMat	blood
9	chr11:75712600-75726200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:75712800-75723400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:75712800-75727800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr11:75712800-75731200	Weak transcription	Right Ventricle	heart
13	chr11:75713000-75723600	Weak transcription	Fetal Brain Male	brain
14	chr11:75713200-75728000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:75713200-75728200	Weak transcription	Fetal Kidney	kidney
16	chr11:75713600-75728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:75713600-75734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:75713800-75737200	Strong transcription	Primary B cells from cord blood	blood
19	chr11:75713800-75739600	Weak transcription	Fetal Brain Female	brain
20	chr11:75714800-75724400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr11:75715000-75724000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:75715600-75728000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:75716000-75728400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:75716800-75723400	Weak transcription	Fetal Lung	lung
25	chr11:75716800-75728000	Weak transcription	Hela-S3	cervix
26	chr11:75716800-75734200	Weak transcription	K562	blood
27	chr11:75716800-75734800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:75716800-75778200	Weak transcription	Ovary	ovary
29	chr11:75717000-75723600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:75717000-75723600	Weak transcription	Brain Substantia Nigra	brain
31	chr11:75717000-75724000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:75717000-75728000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:75717000-75728200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:75717000-75728200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:75717000-75728400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:75717000-75728400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:75717000-75730200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:75717000-75730600	Weak transcription	Fetal Thymus	thymus
39	chr11:75717000-75730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:75717000-75736200	Weak transcription	Brain Angular Gyrus	brain
41	chr11:75717000-75741200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:75717200-75723600	Weak transcription	Aorta	Aorta
43	chr11:75717200-75727800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr11:75717200-75730600	Weak transcription	Lung	lung
45	chr11:75717200-75730800	Weak transcription	Fetal Intestine Large	intestine
46	chr11:75717200-75730800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr11:75717200-75730800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:75717200-75741400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:75717400-75727800	Weak transcription	Placenta	Placenta
50	chr11:75717400-75728000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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