Variant report

Variant	rs73493995
Chromosome Location	chr11:75698489-75698490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75696955..75699803-chr11:75701156..75703842,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs11821272	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822333	0.91[EUR][1000 genomes]
rs11825529	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11826581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470235	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[EUR][1000 genomes]
rs1521530	0.91[EUR][1000 genomes]
rs17134493	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134510	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	0.91[EUR][1000 genomes]
rs17134568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2139934	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56071239	0.80[AMR][1000 genomes]
rs56117351	1.00[EUR][1000 genomes]
rs56154425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56272311	0.91[EUR][1000 genomes]
rs56803972	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[EUR][1000 genomes]
rs57211393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.91[EUR][1000 genomes]
rs57372160	1.00[EUR][1000 genomes]
rs57603155	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723633	0.89[AMR][1000 genomes]
rs58402577	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550963	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58719494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59131065	0.80[AMR][1000 genomes]
rs59786011	1.00[EUR][1000 genomes]
rs59789333	0.84[EUR][1000 genomes]
rs60175455	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60864005	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61422358	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	1.00[EUR][1000 genomes]
rs6592619	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592620	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	0.91[EUR][1000 genomes]
rs6592625	0.91[EUR][1000 genomes]
rs6592626	0.91[EUR][1000 genomes]
rs6592627	0.91[EUR][1000 genomes]
rs7102363	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	1.00[EUR][1000 genomes]
rs7103027	0.91[EUR][1000 genomes]
rs7103307	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	0.91[EUR][1000 genomes]
rs7104995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	0.91[EUR][1000 genomes]
rs7109579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110886	1.00[EUR][1000 genomes]
rs7111495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	1.00[EUR][1000 genomes]
rs7115733	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	1.00[ASN][1000 genomes]
rs7121323	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[EUR][1000 genomes]
rs7123752	1.00[EUR][1000 genomes]
rs7127326	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[EUR][1000 genomes]
rs7129433	0.96[EUR][1000 genomes]
rs7131447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493967	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73493979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73496123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496136	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496192	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930216	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933454	0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes]
rs7937889	0.91[EUR][1000 genomes]
rs7941335	1.00[EUR][1000 genomes]
rs7942870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944561	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75667000-75715200	Weak transcription	Left Ventricle	heart
2	chr11:75673000-75714800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:75675800-75700200	Weak transcription	Lung	lung
4	chr11:75678000-75715600	Weak transcription	Aorta	Aorta
5	chr11:75679600-75699000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:75679600-75716400	Weak transcription	Hela-S3	cervix
7	chr11:75681000-75700400	Weak transcription	Small Intestine	intestine
8	chr11:75682200-75715000	Weak transcription	Thymus	Thymus
9	chr11:75689000-75715200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:75689200-75716600	Weak transcription	Spleen	Spleen
11	chr11:75690400-75704200	Weak transcription	Fetal Stomach	stomach
12	chr11:75691000-75698800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:75691000-75704200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:75691000-75715600	Weak transcription	Fetal Intestine Small	intestine
15	chr11:75691400-75700800	Weak transcription	Fetal Brain Male	brain
16	chr11:75691400-75716600	Weak transcription	Gastric	stomach
17	chr11:75691600-75701800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:75692400-75702400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr11:75692600-75716000	Weak transcription	Ovary	ovary
20	chr11:75693000-75715000	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:75693000-75728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:75693000-75730000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:75693200-75700400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr11:75693200-75700800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:75693200-75711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:75693200-75715000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:75693400-75702000	Weak transcription	Brain Angular Gyrus	brain
28	chr11:75693400-75708200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:75693600-75700800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:75693600-75716600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:75693800-75700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:75693800-75708200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:75693800-75708800	Weak transcription	Psoas Muscle	Psoas
34	chr11:75693800-75714800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:75693800-75715000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:75694000-75717200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:75694400-75698600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:75694400-75701800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:75694400-75702200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:75694400-75715000	Weak transcription	Fetal Intestine Large	intestine
41	chr11:75695600-75699600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:75695600-75700600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:75695600-75701800	Weak transcription	Brain Substantia Nigra	brain
44	chr11:75695600-75715000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:75695600-75715200	Weak transcription	K562	blood
46	chr11:75695600-75728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:75695800-75700400	Weak transcription	HepG2	liver
48	chr11:75695800-75701800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:75695800-75706000	Weak transcription	Fetal Kidney	kidney
50	chr11:75695800-75707400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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